Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13955

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13950 and ABID97_RS13955 overlap by 1 nucleotidesABID97_RS13955 and ABID97_RS13960 overlap by 4 nucleotidesABID97_RS13960 and ABID97_RS13965 overlap by 11 nucleotides ABID97_RS13950: ABID97_RS13950 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,897,828 to 2,899,876 _RS13950 ABID97_RS13955: ABID97_RS13955 - biotin synthase BioB, at 2,899,876 to 2,900,901 _RS13955 ABID97_RS13960: ABID97_RS13960 - VOC family protein, at 2,900,898 to 2,901,386 _RS13960 ABID97_RS13965: ABID97_RS13965 - Lrp/AsnC family transcriptional regulator, at 2,901,376 to 2,901,873 _RS13965 Position (kb) 2899 2900 2901Strain fitness (log2 ratio) -2 -1 0 1at 2898.975 kb on - strand, within ABID97_RS13950at 2898.998 kb on + strand, within ABID97_RS13950at 2898.998 kb on + strand, within ABID97_RS13950at 2899.259 kb on + strand, within ABID97_RS13950at 2899.451 kb on + strand, within ABID97_RS13950at 2899.452 kb on - strand, within ABID97_RS13950at 2899.452 kb on - strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.644 kb on - strand, within ABID97_RS13950at 2900.104 kb on + strand, within ABID97_RS13955at 2900.104 kb on + strand, within ABID97_RS13955at 2900.105 kb on - strand, within ABID97_RS13955at 2900.374 kb on + strand, within ABID97_RS13955at 2900.377 kb on + strand, within ABID97_RS13955at 2900.377 kb on + strand, within ABID97_RS13955at 2900.378 kb on - strand, within ABID97_RS13955at 2900.378 kb on - strand, within ABID97_RS13955at 2900.408 kb on - strand, within ABID97_RS13955at 2900.410 kb on + strand, within ABID97_RS13955at 2900.410 kb on + strand, within ABID97_RS13955at 2900.610 kb on - strand, within ABID97_RS13955at 2901.578 kb on + strand, within ABID97_RS13965at 2901.579 kb on - strand, within ABID97_RS13965at 2901.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,898,975 - ABID97_RS13950 0.56 -0.2
2,898,998 + ABID97_RS13950 0.57 -1.9
2,898,998 + ABID97_RS13950 0.57 -0.5
2,899,259 + ABID97_RS13950 0.70 -0.5
2,899,451 + ABID97_RS13950 0.79 -0.3
2,899,452 - ABID97_RS13950 0.79 -1.1
2,899,452 - ABID97_RS13950 0.79 -0.4
2,899,643 + ABID97_RS13950 0.89 -2.2
2,899,643 + ABID97_RS13950 0.89 +0.4
2,899,643 + ABID97_RS13950 0.89 -0.7
2,899,643 + ABID97_RS13950 0.89 -0.5
2,899,644 - ABID97_RS13950 0.89 -0.0
2,900,104 + ABID97_RS13955 0.22 -0.1
2,900,104 + ABID97_RS13955 0.22 -0.7
2,900,105 - ABID97_RS13955 0.22 -0.4
2,900,374 + ABID97_RS13955 0.49 +0.0
2,900,377 + ABID97_RS13955 0.49 -0.6
2,900,377 + ABID97_RS13955 0.49 -0.1
2,900,378 - ABID97_RS13955 0.49 -0.8
2,900,378 - ABID97_RS13955 0.49 -0.7
2,900,408 - ABID97_RS13955 0.52 +1.1
2,900,410 + ABID97_RS13955 0.52 -0.1
2,900,410 + ABID97_RS13955 0.52 -0.2
2,900,610 - ABID97_RS13955 0.72 +0.1
2,901,578 + ABID97_RS13965 0.41 -0.2
2,901,579 - ABID97_RS13965 0.41 -0.5
2,901,866 + -0.1

Or see this region's nucleotide sequence