Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13795

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13785 and ABID97_RS13790 overlap by 7 nucleotidesABID97_RS13790 and ABID97_RS13795 are separated by 163 nucleotidesABID97_RS13795 and ABID97_RS13800 are separated by 52 nucleotides ABID97_RS13785: ABID97_RS13785 - terminase gpA endonuclease subunit, at 2,861,324 to 2,863,444 _RS13785 ABID97_RS13790: ABID97_RS13790 - Mor transcription activator family protein, at 2,863,438 to 2,863,740 _RS13790 ABID97_RS13795: ABID97_RS13795 - hypothetical protein, at 2,863,904 to 2,864,287 _RS13795 ABID97_RS13800: ABID97_RS13800 - hypothetical protein, at 2,864,340 to 2,865,113 _RS13800 Position (kb) 2863 2864 2865Strain fitness (log2 ratio) -1 0 1 2at 2862.942 kb on - strand, within ABID97_RS13785at 2863.617 kb on + strand, within ABID97_RS13790at 2863.842 kb on + strandat 2863.842 kb on + strandat 2863.843 kb on - strandat 2863.880 kb on + strandat 2863.881 kb on - strandat 2863.881 kb on - strandat 2864.033 kb on + strand, within ABID97_RS13795at 2864.033 kb on + strand, within ABID97_RS13795at 2864.034 kb on - strand, within ABID97_RS13795at 2864.525 kb on - strand, within ABID97_RS13800at 2864.549 kb on + strand, within ABID97_RS13800at 2864.729 kb on - strand, within ABID97_RS13800at 2864.910 kb on - strand, within ABID97_RS13800at 2864.976 kb on - strand, within ABID97_RS13800at 2865.140 kb on + strandat 2865.140 kb on + strandat 2865.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,862,942 - ABID97_RS13785 0.76 -0.5
2,863,617 + ABID97_RS13790 0.59 -0.2
2,863,842 + -0.1
2,863,842 + +0.2
2,863,843 - -0.9
2,863,880 + -0.5
2,863,881 - +0.2
2,863,881 - +2.4
2,864,033 + ABID97_RS13795 0.34 -1.1
2,864,033 + ABID97_RS13795 0.34 -0.3
2,864,034 - ABID97_RS13795 0.34 -0.8
2,864,525 - ABID97_RS13800 0.24 +0.3
2,864,549 + ABID97_RS13800 0.27 -0.3
2,864,729 - ABID97_RS13800 0.50 -0.6
2,864,910 - ABID97_RS13800 0.74 -0.0
2,864,976 - ABID97_RS13800 0.82 +0.0
2,865,140 + -0.5
2,865,140 + -0.2
2,865,191 + -0.1

Or see this region's nucleotide sequence