Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12575 and ABID97_RS12580 overlap by 4 nucleotides ABID97_RS12580 and ABID97_RS12585 are separated by 1 nucleotides ABID97_RS12585 and ABID97_RS12590 overlap by 1 nucleotides
ABID97_RS12575: ABID97_RS12575 - ATP-grasp domain-containing protein, at 2,611,018 to 2,612,166
_RS12575
ABID97_RS12580: ABID97_RS12580 - methenyltetrahydromethanopterin cyclohydrolase, at 2,612,163 to 2,613,161
_RS12580
ABID97_RS12585: ABID97_RS12585 - RimK family alpha-L-glutamate ligase, at 2,613,163 to 2,614,110
_RS12585
ABID97_RS12590: ABID97_RS12590 - triphosphoribosyl-dephospho-CoA synthase, at 2,614,110 to 2,615,048
_RS12590
Position (kb) 2612
2613
2614 Strain fitness (log2 ratio) -1
0
1 at 2611.648 kb on + strand, within ABID97_RS12575 at 2611.648 kb on + strand, within ABID97_RS12575 at 2612.466 kb on + strand, within ABID97_RS12580 at 2612.467 kb on - strand, within ABID97_RS12580 at 2613.024 kb on + strand, within ABID97_RS12580 at 2613.033 kb on + strand, within ABID97_RS12580 at 2613.034 kb on - strand, within ABID97_RS12580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 2,611,648 + ABID97_RS12575 0.55 -1.0 2,611,648 + ABID97_RS12575 0.55 -0.3 2,612,466 + ABID97_RS12580 0.30 +1.5 2,612,467 - ABID97_RS12580 0.30 +1.7 2,613,024 + ABID97_RS12580 0.86 +0.9 2,613,033 + ABID97_RS12580 0.87 +0.2 2,613,034 - ABID97_RS12580 0.87 +0.7
Or see this region's nucleotide sequence