Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11625 and ABID97_RS11630 are separated by 40 nucleotides ABID97_RS11630 and ABID97_RS11635 are separated by 71 nucleotides
ABID97_RS11625: ABID97_RS11625 - acyl-CoA dehydrogenase family protein, at 2,401,211 to 2,402,410
_RS11625
ABID97_RS11630: ABID97_RS11630 - SDR family oxidoreductase, at 2,402,451 to 2,403,242
_RS11630
ABID97_RS11635: ABID97_RS11635 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,403,314 to 2,404,585
_RS11635
Position (kb)
2402
2403
2404 Strain fitness (log2 ratio)
-1
0
1 at 2401.839 kb on - strand, within ABID97_RS11625 at 2402.200 kb on + strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.746 kb on + strand, within ABID97_RS11630 at 2402.746 kb on + strand, within ABID97_RS11630 at 2402.747 kb on - strand, within ABID97_RS11630 at 2402.858 kb on + strand, within ABID97_RS11630 at 2402.879 kb on + strand, within ABID97_RS11630 at 2403.693 kb on + strand, within ABID97_RS11635 at 2403.762 kb on + strand, within ABID97_RS11635 at 2403.763 kb on - strand, within ABID97_RS11635 at 2403.765 kb on + strand, within ABID97_RS11635 at 2403.765 kb on + strand, within ABID97_RS11635 at 2403.772 kb on - strand, within ABID97_RS11635 at 2403.772 kb on - strand, within ABID97_RS11635
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 2,401,839 - ABID97_RS11625 0.52 +0.3 2,402,200 + ABID97_RS11625 0.82 -0.2 2,402,201 - ABID97_RS11625 0.82 -1.2 2,402,201 - ABID97_RS11625 0.82 +0.3 2,402,201 - ABID97_RS11625 0.82 -1.0 2,402,201 - ABID97_RS11625 0.82 -0.1 2,402,746 + ABID97_RS11630 0.37 -0.7 2,402,746 + ABID97_RS11630 0.37 -0.7 2,402,747 - ABID97_RS11630 0.37 +1.2 2,402,858 + ABID97_RS11630 0.51 +0.2 2,402,879 + ABID97_RS11630 0.54 +0.2 2,403,693 + ABID97_RS11635 0.30 -0.2 2,403,762 + ABID97_RS11635 0.35 +0.6 2,403,763 - ABID97_RS11635 0.35 -0.2 2,403,765 + ABID97_RS11635 0.35 +0.2 2,403,765 + ABID97_RS11635 0.35 -0.3 2,403,772 - ABID97_RS11635 0.36 -1.3 2,403,772 - ABID97_RS11635 0.36 -0.8
Or see this region's nucleotide sequence