Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11630

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11625 and ABID97_RS11630 are separated by 40 nucleotidesABID97_RS11630 and ABID97_RS11635 are separated by 71 nucleotides ABID97_RS11625: ABID97_RS11625 - acyl-CoA dehydrogenase family protein, at 2,401,211 to 2,402,410 _RS11625 ABID97_RS11630: ABID97_RS11630 - SDR family oxidoreductase, at 2,402,451 to 2,403,242 _RS11630 ABID97_RS11635: ABID97_RS11635 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,403,314 to 2,404,585 _RS11635 Position (kb) 2402 2403 2404Strain fitness (log2 ratio) -1 0 1at 2401.839 kb on - strand, within ABID97_RS11625at 2402.200 kb on + strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.746 kb on + strand, within ABID97_RS11630at 2402.746 kb on + strand, within ABID97_RS11630at 2402.747 kb on - strand, within ABID97_RS11630at 2402.858 kb on + strand, within ABID97_RS11630at 2402.879 kb on + strand, within ABID97_RS11630at 2403.693 kb on + strand, within ABID97_RS11635at 2403.762 kb on + strand, within ABID97_RS11635at 2403.763 kb on - strand, within ABID97_RS11635at 2403.765 kb on + strand, within ABID97_RS11635at 2403.765 kb on + strand, within ABID97_RS11635at 2403.772 kb on - strand, within ABID97_RS11635at 2403.772 kb on - strand, within ABID97_RS11635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
2,401,839 - ABID97_RS11625 0.52 +0.3
2,402,200 + ABID97_RS11625 0.82 -0.2
2,402,201 - ABID97_RS11625 0.82 -1.2
2,402,201 - ABID97_RS11625 0.82 +0.3
2,402,201 - ABID97_RS11625 0.82 -1.0
2,402,201 - ABID97_RS11625 0.82 -0.1
2,402,746 + ABID97_RS11630 0.37 -0.7
2,402,746 + ABID97_RS11630 0.37 -0.7
2,402,747 - ABID97_RS11630 0.37 +1.2
2,402,858 + ABID97_RS11630 0.51 +0.2
2,402,879 + ABID97_RS11630 0.54 +0.2
2,403,693 + ABID97_RS11635 0.30 -0.2
2,403,762 + ABID97_RS11635 0.35 +0.6
2,403,763 - ABID97_RS11635 0.35 -0.2
2,403,765 + ABID97_RS11635 0.35 +0.2
2,403,765 + ABID97_RS11635 0.35 -0.3
2,403,772 - ABID97_RS11635 0.36 -1.3
2,403,772 - ABID97_RS11635 0.36 -0.8

Or see this region's nucleotide sequence