Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11510

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11500 and ABID97_RS11505 are separated by 7 nucleotidesABID97_RS11505 and ABID97_RS11510 are separated by 97 nucleotidesABID97_RS11510 and ABID97_RS11515 overlap by 4 nucleotidesABID97_RS11515 and ABID97_RS11520 are separated by 41 nucleotides ABID97_RS11500: ABID97_RS11500 - substrate-binding domain-containing protein, at 2,373,650 to 2,374,798 _RS11500 ABID97_RS11505: ABID97_RS11505 - branched-chain amino acid ABC transporter permease, at 2,374,806 to 2,375,660 _RS11505 ABID97_RS11510: ABID97_RS11510 - ATP-binding cassette domain-containing protein, at 2,375,758 to 2,377,446 _RS11510 ABID97_RS11515: ABID97_RS11515 - ATP-binding cassette domain-containing protein, at 2,377,443 to 2,378,138 _RS11515 ABID97_RS11520: ABID97_RS11520 - LysR family transcriptional regulator, at 2,378,180 to 2,379,076 _RS11520 Position (kb) 2375 2376 2377 2378Strain fitness (log2 ratio) -1 0 1at 2375.142 kb on + strand, within ABID97_RS11505at 2375.142 kb on + strand, within ABID97_RS11505at 2375.143 kb on - strand, within ABID97_RS11505at 2375.143 kb on - strand, within ABID97_RS11505at 2375.460 kb on + strand, within ABID97_RS11505at 2375.818 kb on + strandat 2375.819 kb on - strandat 2376.002 kb on - strand, within ABID97_RS11510at 2376.002 kb on - strand, within ABID97_RS11510at 2377.693 kb on - strand, within ABID97_RS11515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
2,375,142 + ABID97_RS11505 0.39 -0.3
2,375,142 + ABID97_RS11505 0.39 +0.4
2,375,143 - ABID97_RS11505 0.39 +0.2
2,375,143 - ABID97_RS11505 0.39 -0.9
2,375,460 + ABID97_RS11505 0.76 +0.5
2,375,818 + -0.0
2,375,819 - +1.4
2,376,002 - ABID97_RS11510 0.14 +0.9
2,376,002 - ABID97_RS11510 0.14 +0.7
2,377,693 - ABID97_RS11515 0.36 -0.4

Or see this region's nucleotide sequence