Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11375

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11370 and ABID97_RS11375 are separated by 35 nucleotidesABID97_RS11375 and ABID97_RS11380 are separated by 17 nucleotides ABID97_RS11370: ABID97_RS11370 - nitronate monooxygenase family protein, at 2,347,889 to 2,348,866 _RS11370 ABID97_RS11375: ABID97_RS11375 - tripartite tricarboxylate transporter substrate binding protein, at 2,348,902 to 2,349,930 _RS11375 ABID97_RS11380: ABID97_RS11380 - acetyl-CoA C-acyltransferase, at 2,349,948 to 2,351,132 _RS11380 Position (kb) 2348 2349 2350Strain fitness (log2 ratio) -1 0 1 2 3 4at 2348.256 kb on - strand, within ABID97_RS11370at 2348.401 kb on - strand, within ABID97_RS11370at 2348.495 kb on + strand, within ABID97_RS11370at 2348.495 kb on + strand, within ABID97_RS11370at 2348.496 kb on - strand, within ABID97_RS11370at 2348.548 kb on + strand, within ABID97_RS11370at 2348.791 kb on - strandat 2348.817 kb on - strandat 2348.911 kb on - strandat 2349.274 kb on + strand, within ABID97_RS11375at 2349.274 kb on + strand, within ABID97_RS11375at 2349.275 kb on - strand, within ABID97_RS11375at 2349.413 kb on - strand, within ABID97_RS11375at 2349.421 kb on + strand, within ABID97_RS11375at 2349.928 kb on + strandat 2349.932 kb on + strandat 2349.944 kb on - strandat 2350.503 kb on + strand, within ABID97_RS11380at 2350.623 kb on + strand, within ABID97_RS11380at 2350.924 kb on - strand, within ABID97_RS11380

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,348,256 - ABID97_RS11370 0.38 +0.4
2,348,401 - ABID97_RS11370 0.52 +0.6
2,348,495 + ABID97_RS11370 0.62 -0.5
2,348,495 + ABID97_RS11370 0.62 +0.1
2,348,496 - ABID97_RS11370 0.62 -0.2
2,348,548 + ABID97_RS11370 0.67 -0.1
2,348,791 - +0.2
2,348,817 - -0.1
2,348,911 - -1.0
2,349,274 + ABID97_RS11375 0.36 -0.3
2,349,274 + ABID97_RS11375 0.36 +4.5
2,349,275 - ABID97_RS11375 0.36 +2.0
2,349,413 - ABID97_RS11375 0.50 +2.6
2,349,421 + ABID97_RS11375 0.50 +0.6
2,349,928 + -0.0
2,349,932 + -0.3
2,349,944 - -0.2
2,350,503 + ABID97_RS11380 0.47 +0.1
2,350,623 + ABID97_RS11380 0.57 -0.2
2,350,924 - ABID97_RS11380 0.82 -1.1

Or see this region's nucleotide sequence