Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11285

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11275 and ABID97_RS11280 are separated by 52 nucleotidesABID97_RS11280 and ABID97_RS11285 overlap by 58 nucleotidesABID97_RS11285 and ABID97_RS11290 are separated by 325 nucleotidesABID97_RS11290 and ABID97_RS11295 are separated by 30 nucleotides ABID97_RS11275: ABID97_RS11275 - hypothetical protein, at 2,330,237 to 2,330,677 _RS11275 ABID97_RS11280: ABID97_RS11280 - hypothetical protein, at 2,330,730 to 2,331,167 _RS11280 ABID97_RS11285: ABID97_RS11285 - hypothetical protein, at 2,331,110 to 2,331,967 _RS11285 ABID97_RS11290: ABID97_RS11290 - DNA repair protein RadC, at 2,332,293 to 2,332,823 _RS11290 ABID97_RS11295: ABID97_RS11295 - OST-HTH/LOTUS domain-containing protein, at 2,332,854 to 2,333,090 _RS11295 Position (kb) 2331 2332Strain fitness (log2 ratio) -2 -1 0 1 2at 2330.128 kb on + strandat 2330.129 kb on - strandat 2330.408 kb on - strand, within ABID97_RS11275at 2330.535 kb on + strand, within ABID97_RS11275at 2330.536 kb on - strand, within ABID97_RS11275at 2330.841 kb on - strand, within ABID97_RS11280at 2330.841 kb on - strand, within ABID97_RS11280at 2331.228 kb on + strand, within ABID97_RS11285at 2331.646 kb on + strand, within ABID97_RS11285at 2331.647 kb on - strand, within ABID97_RS11285at 2331.676 kb on + strand, within ABID97_RS11285at 2331.862 kb on - strand, within ABID97_RS11285at 2332.542 kb on - strand, within ABID97_RS11290at 2332.855 kb on + strandat 2332.903 kb on - strand, within ABID97_RS11295at 2332.903 kb on - strand, within ABID97_RS11295at 2332.955 kb on - strand, within ABID97_RS11295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,330,128 + +0.6
2,330,129 - -0.1
2,330,408 - ABID97_RS11275 0.39 -0.3
2,330,535 + ABID97_RS11275 0.68 +0.1
2,330,536 - ABID97_RS11275 0.68 +1.6
2,330,841 - ABID97_RS11280 0.25 +0.2
2,330,841 - ABID97_RS11280 0.25 -2.2
2,331,228 + ABID97_RS11285 0.14 +1.8
2,331,646 + ABID97_RS11285 0.62 +0.6
2,331,647 - ABID97_RS11285 0.63 +0.1
2,331,676 + ABID97_RS11285 0.66 +0.8
2,331,862 - ABID97_RS11285 0.88 +1.2
2,332,542 - ABID97_RS11290 0.47 +0.6
2,332,855 + -0.0
2,332,903 - ABID97_RS11295 0.21 +0.5
2,332,903 - ABID97_RS11295 0.21 -0.1
2,332,955 - ABID97_RS11295 0.43 +0.5

Or see this region's nucleotide sequence