Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11240 and ABID97_RS11245 are separated by 46 nucleotides ABID97_RS11245 and ABID97_RS11250 are separated by 14 nucleotides ABID97_RS11250 and ABID97_RS11255 are separated by 19 nucleotides ABID97_RS11255 and ABID97_RS11260 are separated by 15 nucleotides
ABID97_RS11240: ABID97_RS11240 - L-dopachrome tautomerase-related protein, at 2,324,356 to 2,325,570
_RS11240
ABID97_RS11245: ABID97_RS11245 - putative quinol monooxygenase, at 2,325,617 to 2,325,907
_RS11245
ABID97_RS11250: ABID97_RS11250 - SDR family oxidoreductase, at 2,325,922 to 2,326,716
_RS11250
ABID97_RS11255: ABID97_RS11255 - type 1 glutamine amidotransferase domain-containing protein, at 2,326,736 to 2,327,578
_RS11255
ABID97_RS11260: ABID97_RS11260 - type 1 glutamine amidotransferase domain-containing protein, at 2,327,594 to 2,328,301
_RS11260
Position (kb)
2325
2326
2327 Strain fitness (log2 ratio)
-1
0
1 at 2324.978 kb on + strand, within ABID97_RS11240 at 2324.978 kb on + strand, within ABID97_RS11240 at 2325.082 kb on - strand, within ABID97_RS11240 at 2325.350 kb on + strand, within ABID97_RS11240 at 2325.350 kb on + strand, within ABID97_RS11240 at 2325.350 kb on + strand, within ABID97_RS11240 at 2325.351 kb on - strand, within ABID97_RS11240 at 2325.632 kb on + strand at 2326.413 kb on + strand, within ABID97_RS11250 at 2326.442 kb on + strand, within ABID97_RS11250 at 2327.436 kb on + strand, within ABID97_RS11255
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 2,324,978 + ABID97_RS11240 0.51 +1.2 2,324,978 + ABID97_RS11240 0.51 +0.5 2,325,082 - ABID97_RS11240 0.60 +0.3 2,325,350 + ABID97_RS11240 0.82 -0.7 2,325,350 + ABID97_RS11240 0.82 -0.6 2,325,350 + ABID97_RS11240 0.82 +0.4 2,325,351 - ABID97_RS11240 0.82 -0.1 2,325,632 + +0.3 2,326,413 + ABID97_RS11250 0.62 +0.1 2,326,442 + ABID97_RS11250 0.65 +0.0 2,327,436 + ABID97_RS11255 0.83 -0.8
Or see this region's nucleotide sequence