Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11250

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11240 and ABID97_RS11245 are separated by 46 nucleotidesABID97_RS11245 and ABID97_RS11250 are separated by 14 nucleotidesABID97_RS11250 and ABID97_RS11255 are separated by 19 nucleotidesABID97_RS11255 and ABID97_RS11260 are separated by 15 nucleotides ABID97_RS11240: ABID97_RS11240 - L-dopachrome tautomerase-related protein, at 2,324,356 to 2,325,570 _RS11240 ABID97_RS11245: ABID97_RS11245 - putative quinol monooxygenase, at 2,325,617 to 2,325,907 _RS11245 ABID97_RS11250: ABID97_RS11250 - SDR family oxidoreductase, at 2,325,922 to 2,326,716 _RS11250 ABID97_RS11255: ABID97_RS11255 - type 1 glutamine amidotransferase domain-containing protein, at 2,326,736 to 2,327,578 _RS11255 ABID97_RS11260: ABID97_RS11260 - type 1 glutamine amidotransferase domain-containing protein, at 2,327,594 to 2,328,301 _RS11260 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -1 0 1at 2324.978 kb on + strand, within ABID97_RS11240at 2324.978 kb on + strand, within ABID97_RS11240at 2325.082 kb on - strand, within ABID97_RS11240at 2325.350 kb on + strand, within ABID97_RS11240at 2325.350 kb on + strand, within ABID97_RS11240at 2325.350 kb on + strand, within ABID97_RS11240at 2325.351 kb on - strand, within ABID97_RS11240at 2325.632 kb on + strandat 2326.413 kb on + strand, within ABID97_RS11250at 2326.442 kb on + strand, within ABID97_RS11250at 2327.436 kb on + strand, within ABID97_RS11255

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,324,978 + ABID97_RS11240 0.51 +1.2
2,324,978 + ABID97_RS11240 0.51 +0.5
2,325,082 - ABID97_RS11240 0.60 +0.3
2,325,350 + ABID97_RS11240 0.82 -0.7
2,325,350 + ABID97_RS11240 0.82 -0.6
2,325,350 + ABID97_RS11240 0.82 +0.4
2,325,351 - ABID97_RS11240 0.82 -0.1
2,325,632 + +0.3
2,326,413 + ABID97_RS11250 0.62 +0.1
2,326,442 + ABID97_RS11250 0.65 +0.0
2,327,436 + ABID97_RS11255 0.83 -0.8

Or see this region's nucleotide sequence