Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10320

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10315 and ABID97_RS10320 are separated by 68 nucleotidesABID97_RS10320 and ABID97_RS10325 are separated by 17 nucleotides ABID97_RS10315: ABID97_RS10315 - tripartite tricarboxylate transporter substrate binding protein, at 2,141,944 to 2,142,930 _RS10315 ABID97_RS10320: ABID97_RS10320 - glucose 1-dehydrogenase, at 2,142,999 to 2,143,760 _RS10320 ABID97_RS10325: ABID97_RS10325 - galactarate dehydratase, at 2,143,778 to 2,145,385 _RS10325 Position (kb) 2142 2143 2144Strain fitness (log2 ratio) -2 -1 0 1at 2142.033 kb on - strandat 2142.039 kb on - strandat 2142.641 kb on + strand, within ABID97_RS10315at 2142.642 kb on - strand, within ABID97_RS10315at 2142.792 kb on - strand, within ABID97_RS10315at 2143.009 kb on + strandat 2143.009 kb on + strandat 2143.009 kb on + strandat 2143.009 kb on + strandat 2143.048 kb on + strandat 2143.048 kb on + strandat 2143.075 kb on + strandat 2143.294 kb on + strand, within ABID97_RS10320at 2144.113 kb on + strand, within ABID97_RS10325at 2144.116 kb on - strand, within ABID97_RS10325at 2144.116 kb on - strand, within ABID97_RS10325

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,142,033 - -0.7
2,142,039 - -0.1
2,142,641 + ABID97_RS10315 0.71 -0.0
2,142,642 - ABID97_RS10315 0.71 +0.1
2,142,792 - ABID97_RS10315 0.86 -2.3
2,143,009 + +0.5
2,143,009 + -0.2
2,143,009 + -2.5
2,143,009 + -0.5
2,143,048 + -0.1
2,143,048 + -0.5
2,143,075 + +0.0
2,143,294 + ABID97_RS10320 0.39 -0.4
2,144,113 + ABID97_RS10325 0.21 +0.3
2,144,116 - ABID97_RS10325 0.21 +1.0
2,144,116 - ABID97_RS10325 0.21 -0.2

Or see this region's nucleotide sequence