Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09985

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09980 and ABID97_RS09985 are separated by 9 nucleotidesABID97_RS09985 and ABID97_RS09990 are separated by 126 nucleotides ABID97_RS09980: ABID97_RS09980 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 2,074,878 to 2,075,928 _RS09980 ABID97_RS09985: ABID97_RS09985 - tripartite tricarboxylate transporter substrate binding protein, at 2,075,938 to 2,076,888 _RS09985 ABID97_RS09990: ABID97_RS09990 - LysR family transcriptional regulator, at 2,077,015 to 2,077,965 _RS09990 Position (kb) 2075 2076 2077Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 2074.991 kb on - strand, within ABID97_RS09980at 2074.991 kb on - strand, within ABID97_RS09980at 2075.098 kb on + strand, within ABID97_RS09980at 2075.099 kb on - strand, within ABID97_RS09980at 2075.099 kb on - strand, within ABID97_RS09980at 2075.335 kb on + strand, within ABID97_RS09980at 2075.336 kb on - strand, within ABID97_RS09980at 2076.146 kb on + strand, within ABID97_RS09985at 2076.146 kb on + strand, within ABID97_RS09985at 2076.146 kb on + strand, within ABID97_RS09985at 2076.147 kb on - strand, within ABID97_RS09985at 2076.147 kb on - strand, within ABID97_RS09985at 2076.359 kb on + strand, within ABID97_RS09985at 2076.584 kb on + strand, within ABID97_RS09985at 2076.584 kb on + strand, within ABID97_RS09985at 2076.949 kb on - strandat 2076.969 kb on + strandat 2076.969 kb on + strandat 2077.631 kb on - strand, within ABID97_RS09990at 2077.787 kb on + strand, within ABID97_RS09990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,074,991 - ABID97_RS09980 0.11 +1.3
2,074,991 - ABID97_RS09980 0.11 +1.8
2,075,098 + ABID97_RS09980 0.21 +1.4
2,075,099 - ABID97_RS09980 0.21 +3.0
2,075,099 - ABID97_RS09980 0.21 +0.9
2,075,335 + ABID97_RS09980 0.43 +0.7
2,075,336 - ABID97_RS09980 0.44 +0.7
2,076,146 + ABID97_RS09985 0.22 +0.7
2,076,146 + ABID97_RS09985 0.22 +1.0
2,076,146 + ABID97_RS09985 0.22 +0.8
2,076,147 - ABID97_RS09985 0.22 +6.7
2,076,147 - ABID97_RS09985 0.22 +3.6
2,076,359 + ABID97_RS09985 0.44 +1.4
2,076,584 + ABID97_RS09985 0.68 +0.2
2,076,584 + ABID97_RS09985 0.68 +0.2
2,076,949 - +8.6
2,076,969 + -1.2
2,076,969 + -0.3
2,077,631 - ABID97_RS09990 0.65 -0.3
2,077,787 + ABID97_RS09990 0.81 -0.2

Or see this region's nucleotide sequence