Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09980 and ABID97_RS09985 are separated by 9 nucleotides ABID97_RS09985 and ABID97_RS09990 are separated by 126 nucleotides
ABID97_RS09980: ABID97_RS09980 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 2,074,878 to 2,075,928
_RS09980
ABID97_RS09985: ABID97_RS09985 - tripartite tricarboxylate transporter substrate binding protein, at 2,075,938 to 2,076,888
_RS09985
ABID97_RS09990: ABID97_RS09990 - LysR family transcriptional regulator, at 2,077,015 to 2,077,965
_RS09990
Position (kb)
2075
2076
2077 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8 at 2074.991 kb on - strand, within ABID97_RS09980 at 2074.991 kb on - strand, within ABID97_RS09980 at 2075.098 kb on + strand, within ABID97_RS09980 at 2075.099 kb on - strand, within ABID97_RS09980 at 2075.099 kb on - strand, within ABID97_RS09980 at 2075.335 kb on + strand, within ABID97_RS09980 at 2075.336 kb on - strand, within ABID97_RS09980 at 2076.146 kb on + strand, within ABID97_RS09985 at 2076.146 kb on + strand, within ABID97_RS09985 at 2076.146 kb on + strand, within ABID97_RS09985 at 2076.147 kb on - strand, within ABID97_RS09985 at 2076.147 kb on - strand, within ABID97_RS09985 at 2076.359 kb on + strand, within ABID97_RS09985 at 2076.584 kb on + strand, within ABID97_RS09985 at 2076.584 kb on + strand, within ABID97_RS09985 at 2076.949 kb on - strand at 2076.969 kb on + strand at 2076.969 kb on + strand at 2077.631 kb on - strand, within ABID97_RS09990 at 2077.787 kb on + strand, within ABID97_RS09990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 2,074,991 - ABID97_RS09980 0.11 +1.3 2,074,991 - ABID97_RS09980 0.11 +1.8 2,075,098 + ABID97_RS09980 0.21 +1.4 2,075,099 - ABID97_RS09980 0.21 +3.0 2,075,099 - ABID97_RS09980 0.21 +0.9 2,075,335 + ABID97_RS09980 0.43 +0.7 2,075,336 - ABID97_RS09980 0.44 +0.7 2,076,146 + ABID97_RS09985 0.22 +0.7 2,076,146 + ABID97_RS09985 0.22 +1.0 2,076,146 + ABID97_RS09985 0.22 +0.8 2,076,147 - ABID97_RS09985 0.22 +6.7 2,076,147 - ABID97_RS09985 0.22 +3.6 2,076,359 + ABID97_RS09985 0.44 +1.4 2,076,584 + ABID97_RS09985 0.68 +0.2 2,076,584 + ABID97_RS09985 0.68 +0.2 2,076,949 - +8.6 2,076,969 + -1.2 2,076,969 + -0.3 2,077,631 - ABID97_RS09990 0.65 -0.3 2,077,787 + ABID97_RS09990 0.81 -0.2
Or see this region's nucleotide sequence