Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08385

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08375 and ABID97_RS08380 overlap by 4 nucleotidesABID97_RS08380 and ABID97_RS08385 are separated by 13 nucleotidesABID97_RS08385 and ABID97_RS08390 overlap by 4 nucleotides ABID97_RS08375: ABID97_RS08375 - DNA repair protein RecO, at 1,760,054 to 1,760,827 _RS08375 ABID97_RS08380: ABID97_RS08380 - pyridoxine 5'-phosphate synthase, at 1,760,824 to 1,761,588 _RS08380 ABID97_RS08385: ABID97_RS08385 - holo-ACP synthase, at 1,761,602 to 1,762,003 _RS08385 ABID97_RS08390: ABID97_RS08390 - beta-N-acetylhexosaminidase, at 1,762,000 to 1,763,106 _RS08390 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1760.765 kb on + strandat 1760.766 kb on - strandat 1760.766 kb on - strandat 1760.823 kb on + strandat 1760.823 kb on + strandat 1760.824 kb on - strandat 1760.824 kb on - strandat 1760.847 kb on + strandat 1761.986 kb on + strandat 1761.987 kb on - strandat 1762.403 kb on - strand, within ABID97_RS08390at 1762.622 kb on - strand, within ABID97_RS08390at 1762.622 kb on - strand, within ABID97_RS08390at 1762.672 kb on + strand, within ABID97_RS08390at 1762.819 kb on + strand, within ABID97_RS08390at 1762.819 kb on + strand, within ABID97_RS08390at 1762.819 kb on + strand, within ABID97_RS08390at 1762.819 kb on + strand, within ABID97_RS08390at 1762.820 kb on - strand, within ABID97_RS08390at 1762.820 kb on - strand, within ABID97_RS08390at 1762.820 kb on - strand, within ABID97_RS08390at 1762.820 kb on - strand, within ABID97_RS08390

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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1,760,765 + -0.9
1,760,766 - -1.0
1,760,766 - -1.2
1,760,823 + -0.1
1,760,823 + -0.9
1,760,824 - +0.5
1,760,824 - +0.7
1,760,847 + -0.2
1,761,986 + -0.2
1,761,987 - +0.2
1,762,403 - ABID97_RS08390 0.36 -0.5
1,762,622 - ABID97_RS08390 0.56 -1.5
1,762,622 - ABID97_RS08390 0.56 +0.7
1,762,672 + ABID97_RS08390 0.61 -1.2
1,762,819 + ABID97_RS08390 0.74 -0.9
1,762,819 + ABID97_RS08390 0.74 +1.7
1,762,819 + ABID97_RS08390 0.74 -1.3
1,762,819 + ABID97_RS08390 0.74 +2.2
1,762,820 - ABID97_RS08390 0.74 -1.2
1,762,820 - ABID97_RS08390 0.74 -3.0
1,762,820 - ABID97_RS08390 0.74 -0.9
1,762,820 - ABID97_RS08390 0.74 -1.3

Or see this region's nucleotide sequence