Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08375 and ABID97_RS08380 overlap by 4 nucleotides ABID97_RS08380 and ABID97_RS08385 are separated by 13 nucleotides ABID97_RS08385 and ABID97_RS08390 overlap by 4 nucleotides
ABID97_RS08375: ABID97_RS08375 - DNA repair protein RecO, at 1,760,054 to 1,760,827
_RS08375
ABID97_RS08380: ABID97_RS08380 - pyridoxine 5'-phosphate synthase, at 1,760,824 to 1,761,588
_RS08380
ABID97_RS08385: ABID97_RS08385 - holo-ACP synthase, at 1,761,602 to 1,762,003
_RS08385
ABID97_RS08390: ABID97_RS08390 - beta-N-acetylhexosaminidase, at 1,762,000 to 1,763,106
_RS08390
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1760.765 kb on + strand at 1760.766 kb on - strand at 1760.766 kb on - strand at 1760.823 kb on + strand at 1760.823 kb on + strand at 1760.824 kb on - strand at 1760.824 kb on - strand at 1760.847 kb on + strand at 1761.986 kb on + strand at 1761.987 kb on - strand at 1762.403 kb on - strand, within ABID97_RS08390 at 1762.622 kb on - strand, within ABID97_RS08390 at 1762.622 kb on - strand, within ABID97_RS08390 at 1762.672 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,760,765 + -0.9 1,760,766 - -1.0 1,760,766 - -1.2 1,760,823 + -0.1 1,760,823 + -0.9 1,760,824 - +0.5 1,760,824 - +0.7 1,760,847 + -0.2 1,761,986 + -0.2 1,761,987 - +0.2 1,762,403 - ABID97_RS08390 0.36 -0.5 1,762,622 - ABID97_RS08390 0.56 -1.5 1,762,622 - ABID97_RS08390 0.56 +0.7 1,762,672 + ABID97_RS08390 0.61 -1.2 1,762,819 + ABID97_RS08390 0.74 -0.9 1,762,819 + ABID97_RS08390 0.74 +1.7 1,762,819 + ABID97_RS08390 0.74 -1.3 1,762,819 + ABID97_RS08390 0.74 +2.2 1,762,820 - ABID97_RS08390 0.74 -1.2 1,762,820 - ABID97_RS08390 0.74 -3.0 1,762,820 - ABID97_RS08390 0.74 -0.9 1,762,820 - ABID97_RS08390 0.74 -1.3
Or see this region's nucleotide sequence