Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08310

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08305 and ABID97_RS08310 are separated by 25 nucleotidesABID97_RS08310 and ABID97_RS08315 are separated by 99 nucleotidesABID97_RS08315 and ABID97_RS08320 are separated by 96 nucleotides ABID97_RS08305: ABID97_RS08305 - ACP S-malonyltransferase, at 1,746,718 to 1,747,671 _RS08305 ABID97_RS08310: ABID97_RS08310 - 3-oxoacyl-ACP reductase FabG, at 1,747,697 to 1,748,443 _RS08310 ABID97_RS08315: ABID97_RS08315 - acyl carrier protein, at 1,748,543 to 1,748,782 _RS08315 ABID97_RS08320: ABID97_RS08320 - beta-ketoacyl-ACP synthase II, at 1,748,879 to 1,750,123 _RS08320 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -1 0 1at 1746.710 kb on + strandat 1746.710 kb on + strandat 1746.710 kb on + strandat 1748.432 kb on + strandat 1748.432 kb on + strandat 1748.432 kb on + strandat 1748.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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1,746,710 + -0.4
1,746,710 + -0.3
1,746,710 + +0.2
1,748,432 + -0.6
1,748,432 + -1.0
1,748,432 + +1.2
1,748,432 + +0.6

Or see this region's nucleotide sequence