Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07445 and ABID97_RS07450 are separated by 70 nucleotides ABID97_RS07450 and ABID97_RS07455 are separated by 39 nucleotides ABID97_RS07455 and ABID97_RS07460 overlap by 4 nucleotides
ABID97_RS07445: ABID97_RS07445 - ScpA family protein, at 1,572,093 to 1,572,929
_RS07445
ABID97_RS07450: ABID97_RS07450 - DUF3460 family protein, at 1,573,000 to 1,573,206
_RS07450
ABID97_RS07455: ABID97_RS07455 - outer membrane protein assembly factor BamE, at 1,573,246 to 1,573,750
_RS07455
ABID97_RS07460: ABID97_RS07460 - IS481 family transposase, at 1,573,747 to 1,574,697
_RS07460
Position (kb)
1573
1574 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1573.001 kb on + strand at 1573.002 kb on - strand at 1573.002 kb on - strand at 1573.020 kb on - strand at 1573.026 kb on - strand, within ABID97_RS07450 at 1573.026 kb on - strand, within ABID97_RS07450 at 1573.056 kb on - strand, within ABID97_RS07450 at 1573.181 kb on + strand, within ABID97_RS07450 at 1573.181 kb on + strand, within ABID97_RS07450 at 1573.181 kb on + strand, within ABID97_RS07450 at 1573.207 kb on - strand at 1573.207 kb on - strand at 1573.207 kb on - strand at 1573.207 kb on - strand at 1573.435 kb on + strand, within ABID97_RS07455 at 1573.436 kb on - strand, within ABID97_RS07455 at 1573.436 kb on - strand, within ABID97_RS07455 at 1573.465 kb on + strand, within ABID97_RS07455 at 1573.465 kb on + strand, within ABID97_RS07455 at 1573.465 kb on + strand, within ABID97_RS07455 at 1573.465 kb on + strand, within ABID97_RS07455 at 1573.465 kb on + strand, within ABID97_RS07455 at 1573.466 kb on - strand, within ABID97_RS07455 at 1573.466 kb on - strand, within ABID97_RS07455 at 1573.749 kb on - strand at 1573.749 kb on - strand at 1573.749 kb on - strand at 1573.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,573,001 + -2.3 1,573,002 - -3.8 1,573,002 - -0.3 1,573,020 - +0.5 1,573,026 - ABID97_RS07450 0.13 -0.3 1,573,026 - ABID97_RS07450 0.13 -1.0 1,573,056 - ABID97_RS07450 0.27 -0.5 1,573,181 + ABID97_RS07450 0.87 -1.3 1,573,181 + ABID97_RS07450 0.87 -0.5 1,573,181 + ABID97_RS07450 0.87 -2.9 1,573,207 - -0.7 1,573,207 - -1.6 1,573,207 - -0.4 1,573,207 - -0.8 1,573,435 + ABID97_RS07455 0.37 -0.5 1,573,436 - ABID97_RS07455 0.38 +0.6 1,573,436 - ABID97_RS07455 0.38 +0.6 1,573,465 + ABID97_RS07455 0.43 +0.2 1,573,465 + ABID97_RS07455 0.43 +2.5 1,573,465 + ABID97_RS07455 0.43 +0.3 1,573,465 + ABID97_RS07455 0.43 +0.1 1,573,465 + ABID97_RS07455 0.43 +0.1 1,573,466 - ABID97_RS07455 0.44 +2.1 1,573,466 - ABID97_RS07455 0.44 +2.4 1,573,749 - +1.3 1,573,749 - +0.6 1,573,749 - -0.3 1,573,749 - +0.4
Or see this region's nucleotide sequence