Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07455

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07445 and ABID97_RS07450 are separated by 70 nucleotidesABID97_RS07450 and ABID97_RS07455 are separated by 39 nucleotidesABID97_RS07455 and ABID97_RS07460 overlap by 4 nucleotides ABID97_RS07445: ABID97_RS07445 - ScpA family protein, at 1,572,093 to 1,572,929 _RS07445 ABID97_RS07450: ABID97_RS07450 - DUF3460 family protein, at 1,573,000 to 1,573,206 _RS07450 ABID97_RS07455: ABID97_RS07455 - outer membrane protein assembly factor BamE, at 1,573,246 to 1,573,750 _RS07455 ABID97_RS07460: ABID97_RS07460 - IS481 family transposase, at 1,573,747 to 1,574,697 _RS07460 Position (kb) 1573 1574Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1573.001 kb on + strandat 1573.002 kb on - strandat 1573.002 kb on - strandat 1573.020 kb on - strandat 1573.026 kb on - strand, within ABID97_RS07450at 1573.026 kb on - strand, within ABID97_RS07450at 1573.056 kb on - strand, within ABID97_RS07450at 1573.181 kb on + strand, within ABID97_RS07450at 1573.181 kb on + strand, within ABID97_RS07450at 1573.181 kb on + strand, within ABID97_RS07450at 1573.207 kb on - strandat 1573.207 kb on - strandat 1573.207 kb on - strandat 1573.207 kb on - strandat 1573.435 kb on + strand, within ABID97_RS07455at 1573.436 kb on - strand, within ABID97_RS07455at 1573.436 kb on - strand, within ABID97_RS07455at 1573.465 kb on + strand, within ABID97_RS07455at 1573.465 kb on + strand, within ABID97_RS07455at 1573.465 kb on + strand, within ABID97_RS07455at 1573.465 kb on + strand, within ABID97_RS07455at 1573.465 kb on + strand, within ABID97_RS07455at 1573.466 kb on - strand, within ABID97_RS07455at 1573.466 kb on - strand, within ABID97_RS07455at 1573.749 kb on - strandat 1573.749 kb on - strandat 1573.749 kb on - strandat 1573.749 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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1,573,001 + -2.3
1,573,002 - -3.8
1,573,002 - -0.3
1,573,020 - +0.5
1,573,026 - ABID97_RS07450 0.13 -0.3
1,573,026 - ABID97_RS07450 0.13 -1.0
1,573,056 - ABID97_RS07450 0.27 -0.5
1,573,181 + ABID97_RS07450 0.87 -1.3
1,573,181 + ABID97_RS07450 0.87 -0.5
1,573,181 + ABID97_RS07450 0.87 -2.9
1,573,207 - -0.7
1,573,207 - -1.6
1,573,207 - -0.4
1,573,207 - -0.8
1,573,435 + ABID97_RS07455 0.37 -0.5
1,573,436 - ABID97_RS07455 0.38 +0.6
1,573,436 - ABID97_RS07455 0.38 +0.6
1,573,465 + ABID97_RS07455 0.43 +0.2
1,573,465 + ABID97_RS07455 0.43 +2.5
1,573,465 + ABID97_RS07455 0.43 +0.3
1,573,465 + ABID97_RS07455 0.43 +0.1
1,573,465 + ABID97_RS07455 0.43 +0.1
1,573,466 - ABID97_RS07455 0.44 +2.1
1,573,466 - ABID97_RS07455 0.44 +2.4
1,573,749 - +1.3
1,573,749 - +0.6
1,573,749 - -0.3
1,573,749 - +0.4

Or see this region's nucleotide sequence