Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07285

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS07275 and ABID97_RS07280 are separated by 113 nucleotidesABID97_RS07280 and ABID97_RS07285 are separated by 10 nucleotidesABID97_RS07285 and ABID97_RS07290 are separated by 33 nucleotides ABID97_RS07275: ABID97_RS07275 - sodium:solute symporter family protein, at 1,543,562 to 1,545,010 _RS07275 ABID97_RS07280: ABID97_RS07280 - FmdB family zinc ribbon protein, at 1,545,124 to 1,545,465 _RS07280 ABID97_RS07285: ABID97_RS07285 - DUF502 domain-containing protein, at 1,545,476 to 1,546,096 _RS07285 ABID97_RS07290: ABID97_RS07290 - aspartate--tRNA ligase, at 1,546,130 to 1,547,935 _RS07290 Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -1 0 1 2 3 4at 1544.693 kb on + strand, within ABID97_RS07275at 1544.693 kb on + strand, within ABID97_RS07275at 1544.694 kb on - strand, within ABID97_RS07275at 1544.694 kb on - strand, within ABID97_RS07275at 1544.694 kb on - strand, within ABID97_RS07275at 1544.694 kb on - strand, within ABID97_RS07275at 1544.723 kb on + strand, within ABID97_RS07275at 1544.723 kb on + strandat 1544.723 kb on + strand, within ABID97_RS07275at 1544.724 kb on - strand, within ABID97_RS07275at 1544.793 kb on - strand, within ABID97_RS07275at 1545.039 kb on + strandat 1545.039 kb on + strandat 1545.040 kb on - strandat 1545.041 kb on + strandat 1545.617 kb on + strand, within ABID97_RS07285at 1545.926 kb on + strand, within ABID97_RS07285at 1545.938 kb on + strand, within ABID97_RS07285at 1545.971 kb on + strand, within ABID97_RS07285at 1546.037 kb on + strandat 1546.037 kb on + strandat 1546.037 kb on + strandat 1546.037 kb on + strandat 1546.037 kb on + strandat 1546.094 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
1,544,693 + ABID97_RS07275 0.78 -1.4
1,544,693 + ABID97_RS07275 0.78 -0.4
1,544,694 - ABID97_RS07275 0.78 -1.1
1,544,694 - ABID97_RS07275 0.78 -1.0
1,544,694 - ABID97_RS07275 0.78 -0.9
1,544,694 - ABID97_RS07275 0.78 -1.1
1,544,723 + ABID97_RS07275 0.80 -0.6
1,544,723 + +3.9
1,544,723 + ABID97_RS07275 0.80 -0.8
1,544,724 - ABID97_RS07275 0.80 -0.3
1,544,793 - ABID97_RS07275 0.85 -1.2
1,545,039 + +0.3
1,545,039 + -0.5
1,545,040 - -0.3
1,545,041 + +0.4
1,545,617 + ABID97_RS07285 0.23 +1.1
1,545,926 + ABID97_RS07285 0.72 +0.8
1,545,938 + ABID97_RS07285 0.74 +1.9
1,545,971 + ABID97_RS07285 0.80 +1.5
1,546,037 + +1.5
1,546,037 + +1.2
1,546,037 + +1.5
1,546,037 + +1.2
1,546,037 + +0.9
1,546,094 + -0.9

Or see this region's nucleotide sequence