Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07275 and ABID97_RS07280 are separated by 113 nucleotides ABID97_RS07280 and ABID97_RS07285 are separated by 10 nucleotides ABID97_RS07285 and ABID97_RS07290 are separated by 33 nucleotides
ABID97_RS07275: ABID97_RS07275 - sodium:solute symporter family protein, at 1,543,562 to 1,545,010
_RS07275
ABID97_RS07280: ABID97_RS07280 - FmdB family zinc ribbon protein, at 1,545,124 to 1,545,465
_RS07280
ABID97_RS07285: ABID97_RS07285 - DUF502 domain-containing protein, at 1,545,476 to 1,546,096
_RS07285
ABID97_RS07290: ABID97_RS07290 - aspartate--tRNA ligase, at 1,546,130 to 1,547,935
_RS07290
Position (kb)
1545
1546
1547 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1544.693 kb on + strand, within ABID97_RS07275 at 1544.693 kb on + strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.723 kb on + strand, within ABID97_RS07275 at 1544.723 kb on + strand at 1544.723 kb on + strand, within ABID97_RS07275 at 1544.724 kb on - strand, within ABID97_RS07275 at 1544.793 kb on - strand, within ABID97_RS07275 at 1545.039 kb on + strand at 1545.039 kb on + strand at 1545.040 kb on - strand at 1545.041 kb on + strand at 1545.617 kb on + strand, within ABID97_RS07285 at 1545.926 kb on + strand, within ABID97_RS07285 at 1545.938 kb on + strand, within ABID97_RS07285 at 1545.971 kb on + strand, within ABID97_RS07285 at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,544,693 + ABID97_RS07275 0.78 -1.4 1,544,693 + ABID97_RS07275 0.78 -0.4 1,544,694 - ABID97_RS07275 0.78 -1.1 1,544,694 - ABID97_RS07275 0.78 -1.0 1,544,694 - ABID97_RS07275 0.78 -0.9 1,544,694 - ABID97_RS07275 0.78 -1.1 1,544,723 + ABID97_RS07275 0.80 -0.6 1,544,723 + +3.9 1,544,723 + ABID97_RS07275 0.80 -0.8 1,544,724 - ABID97_RS07275 0.80 -0.3 1,544,793 - ABID97_RS07275 0.85 -1.2 1,545,039 + +0.3 1,545,039 + -0.5 1,545,040 - -0.3 1,545,041 + +0.4 1,545,617 + ABID97_RS07285 0.23 +1.1 1,545,926 + ABID97_RS07285 0.72 +0.8 1,545,938 + ABID97_RS07285 0.74 +1.9 1,545,971 + ABID97_RS07285 0.80 +1.5 1,546,037 + +1.5 1,546,037 + +1.2 1,546,037 + +1.5 1,546,037 + +1.2 1,546,037 + +0.9 1,546,094 + -0.9
Or see this region's nucleotide sequence