Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07085 and ABID97_RS07090 overlap by 14 nucleotides ABID97_RS07090 and ABID97_RS07095 are separated by 244 nucleotides ABID97_RS07095 and ABID97_RS07100 are separated by 2 nucleotides
ABID97_RS07085: ABID97_RS07085 - HAD family phosphatase, at 1,501,630 to 1,502,271
_RS07085
ABID97_RS07090: ABID97_RS07090 - lipocalin family protein, at 1,502,258 to 1,502,935
_RS07090
ABID97_RS07095: ABID97_RS07095 - transaldolase, at 1,503,180 to 1,504,139
_RS07095
ABID97_RS07100: ABID97_RS07100 - glucose-6-phosphate isomerase, at 1,504,142 to 1,505,707
_RS07100
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1502.259 kb on + strand at 1502.260 kb on - strand at 1502.373 kb on + strand, within ABID97_RS07090 at 1502.373 kb on + strand, within ABID97_RS07090 at 1502.373 kb on + strand, within ABID97_RS07090 at 1502.409 kb on + strand, within ABID97_RS07090 at 1502.436 kb on + strand, within ABID97_RS07090 at 1502.436 kb on + strand, within ABID97_RS07090 at 1502.619 kb on + strand, within ABID97_RS07090 at 1502.620 kb on - strand, within ABID97_RS07090 at 1502.697 kb on + strand, within ABID97_RS07090 at 1502.697 kb on + strand, within ABID97_RS07090 at 1502.697 kb on + strand, within ABID97_RS07090 at 1502.698 kb on - strand, within ABID97_RS07090 at 1503.034 kb on + strand at 1503.034 kb on + strand at 1503.103 kb on - strand at 1503.103 kb on - strand at 1503.169 kb on + strand at 1503.513 kb on + strand, within ABID97_RS07095 at 1503.513 kb on + strand, within ABID97_RS07095 at 1503.513 kb on + strand, within ABID97_RS07095 at 1503.514 kb on - strand, within ABID97_RS07095 at 1503.708 kb on + strand, within ABID97_RS07095 at 1503.708 kb on + strand, within ABID97_RS07095 at 1503.709 kb on - strand, within ABID97_RS07095 at 1503.717 kb on + strand, within ABID97_RS07095 at 1503.717 kb on + strand, within ABID97_RS07095 at 1503.717 kb on + strand, within ABID97_RS07095 at 1503.718 kb on - strand, within ABID97_RS07095 at 1503.808 kb on - strand, within ABID97_RS07095 at 1503.810 kb on + strand, within ABID97_RS07095 at 1503.811 kb on - strand, within ABID97_RS07095 at 1503.811 kb on - strand, within ABID97_RS07095 at 1503.811 kb on - strand, within ABID97_RS07095 at 1504.138 kb on - strand at 1504.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,502,259 + -0.1 1,502,260 - +0.1 1,502,373 + ABID97_RS07090 0.17 -0.1 1,502,373 + ABID97_RS07090 0.17 -0.2 1,502,373 + ABID97_RS07090 0.17 -0.1 1,502,409 + ABID97_RS07090 0.22 +0.7 1,502,436 + ABID97_RS07090 0.26 -0.0 1,502,436 + ABID97_RS07090 0.26 -0.1 1,502,619 + ABID97_RS07090 0.53 -0.2 1,502,620 - ABID97_RS07090 0.53 +0.4 1,502,697 + ABID97_RS07090 0.65 +0.3 1,502,697 + ABID97_RS07090 0.65 +1.3 1,502,697 + ABID97_RS07090 0.65 +0.4 1,502,698 - ABID97_RS07090 0.65 -0.8 1,503,034 + -1.0 1,503,034 + +0.2 1,503,103 - +0.3 1,503,103 - -0.2 1,503,169 + +0.3 1,503,513 + ABID97_RS07095 0.35 +1.3 1,503,513 + ABID97_RS07095 0.35 +0.1 1,503,513 + ABID97_RS07095 0.35 -0.3 1,503,514 - ABID97_RS07095 0.35 -0.5 1,503,708 + ABID97_RS07095 0.55 -0.2 1,503,708 + ABID97_RS07095 0.55 +0.4 1,503,709 - ABID97_RS07095 0.55 -1.9 1,503,717 + ABID97_RS07095 0.56 -0.1 1,503,717 + ABID97_RS07095 0.56 -0.2 1,503,717 + ABID97_RS07095 0.56 -0.0 1,503,718 - ABID97_RS07095 0.56 +0.1 1,503,808 - ABID97_RS07095 0.65 +1.0 1,503,810 + ABID97_RS07095 0.66 -0.5 1,503,811 - ABID97_RS07095 0.66 -1.0 1,503,811 - ABID97_RS07095 0.66 -1.3 1,503,811 - ABID97_RS07095 0.66 -3.4 1,504,138 - +0.8 1,504,138 - +0.9
Or see this region's nucleotide sequence