Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05830 and ABID97_RS05835 are separated by 27 nucleotides ABID97_RS05835 and ABID97_RS05840 are separated by 73 nucleotides ABID97_RS05840 and ABID97_RS05845 are separated by 129 nucleotides
ABID97_RS05830: ABID97_RS05830 - SDR family NAD(P)-dependent oxidoreductase, at 1,232,386 to 1,233,132
_RS05830
ABID97_RS05835: ABID97_RS05835 - fumarylacetoacetate hydrolase family protein, at 1,233,160 to 1,234,008
_RS05835
ABID97_RS05840: ABID97_RS05840 - LysR substrate-binding domain-containing protein, at 1,234,082 to 1,234,966
_RS05840
ABID97_RS05845: ABID97_RS05845 - SDR family oxidoreductase, at 1,235,096 to 1,235,854
_RS05845
Position (kb) 1234
1235 Strain fitness (log2 ratio) -1
0
1
2 at 1233.127 kb on + strand at 1233.128 kb on - strand at 1233.128 kb on - strand at 1233.133 kb on + strand at 1233.133 kb on + strand at 1233.134 kb on - strand at 1233.397 kb on + strand, within ABID97_RS05835 at 1233.397 kb on + strand, within ABID97_RS05835 at 1233.397 kb on + strand, within ABID97_RS05835 at 1233.398 kb on - strand, within ABID97_RS05835 at 1233.398 kb on - strand, within ABID97_RS05835 at 1233.568 kb on + strand, within ABID97_RS05835 at 1233.569 kb on - strand, within ABID97_RS05835 at 1234.007 kb on - strand at 1234.110 kb on + strand at 1234.111 kb on - strand at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.657 kb on - strand, within ABID97_RS05840 at 1234.657 kb on - strand, within ABID97_RS05840 at 1235.736 kb on - strand, within ABID97_RS05845 at 1235.736 kb on - strand, within ABID97_RS05845 at 1235.783 kb on + strand at 1235.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,233,127 + +1.7 1,233,128 - -0.2 1,233,128 - -0.4 1,233,133 + +0.8 1,233,133 + +0.7 1,233,134 - +1.0 1,233,397 + ABID97_RS05835 0.28 -0.4 1,233,397 + ABID97_RS05835 0.28 -0.8 1,233,397 + ABID97_RS05835 0.28 -0.9 1,233,398 - ABID97_RS05835 0.28 -1.1 1,233,398 - ABID97_RS05835 0.28 -0.6 1,233,568 + ABID97_RS05835 0.48 -1.6 1,233,569 - ABID97_RS05835 0.48 +0.2 1,234,007 - +1.0 1,234,110 + +0.3 1,234,111 - +1.7 1,234,656 + ABID97_RS05840 0.65 +0.1 1,234,656 + ABID97_RS05840 0.65 +1.5 1,234,656 + ABID97_RS05840 0.65 +0.9 1,234,656 + ABID97_RS05840 0.65 +0.5 1,234,656 + ABID97_RS05840 0.65 +0.5 1,234,657 - ABID97_RS05840 0.65 +2.0 1,234,657 - ABID97_RS05840 0.65 +0.9 1,235,736 - ABID97_RS05845 0.84 +0.7 1,235,736 - ABID97_RS05845 0.84 +1.3 1,235,783 + +0.0 1,235,784 - +1.8
Or see this region's nucleotide sequence