Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05820 and ABID97_RS05825 are separated by 129 nucleotides ABID97_RS05825 and ABID97_RS05830 overlap by 4 nucleotides ABID97_RS05830 and ABID97_RS05835 are separated by 27 nucleotides ABID97_RS05835 and ABID97_RS05840 are separated by 73 nucleotides
ABID97_RS05820: ABID97_RS05820 - FadR/GntR family transcriptional regulator, at 1,230,818 to 1,231,525
_RS05820
ABID97_RS05825: ABID97_RS05825 - SDR family oxidoreductase, at 1,231,655 to 1,232,389
_RS05825
ABID97_RS05830: ABID97_RS05830 - SDR family NAD(P)-dependent oxidoreductase, at 1,232,386 to 1,233,132
_RS05830
ABID97_RS05835: ABID97_RS05835 - fumarylacetoacetate hydrolase family protein, at 1,233,160 to 1,234,008
_RS05835
ABID97_RS05840: ABID97_RS05840 - LysR substrate-binding domain-containing protein, at 1,234,082 to 1,234,966
_RS05840
Position (kb) 1232
1233
1234 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 1231.583 kb on + strand at 1231.583 kb on + strand at 1231.583 kb on + strand at 1231.584 kb on - strand at 1231.643 kb on + strand at 1232.144 kb on + strand, within ABID97_RS05825 at 1232.144 kb on + strand, within ABID97_RS05825 at 1232.144 kb on + strand, within ABID97_RS05825 at 1232.145 kb on - strand, within ABID97_RS05825 at 1232.384 kb on + strand at 1232.386 kb on - strand at 1232.386 kb on - strand at 1232.803 kb on - strand, within ABID97_RS05830 at 1232.849 kb on - strand, within ABID97_RS05830 at 1233.127 kb on + strand at 1233.128 kb on - strand at 1233.128 kb on - strand at 1233.133 kb on + strand at 1233.133 kb on + strand at 1233.134 kb on - strand at 1233.397 kb on + strand, within ABID97_RS05835 at 1233.397 kb on + strand, within ABID97_RS05835 at 1233.397 kb on + strand, within ABID97_RS05835 at 1233.398 kb on - strand, within ABID97_RS05835 at 1233.398 kb on - strand, within ABID97_RS05835 at 1233.568 kb on + strand, within ABID97_RS05835 at 1233.569 kb on - strand, within ABID97_RS05835 at 1234.007 kb on - strand at 1234.110 kb on + strand at 1234.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,231,583 + +2.4 1,231,583 + +2.6 1,231,583 + +2.8 1,231,584 - +12.7 1,231,643 + +6.5 1,232,144 + ABID97_RS05825 0.67 +6.7 1,232,144 + ABID97_RS05825 0.67 +6.8 1,232,144 + ABID97_RS05825 0.67 +6.7 1,232,145 - ABID97_RS05825 0.67 +6.1 1,232,384 + +3.6 1,232,386 - +3.0 1,232,386 - +2.4 1,232,803 - ABID97_RS05830 0.56 +2.0 1,232,849 - ABID97_RS05830 0.62 +1.9 1,233,127 + +1.7 1,233,128 - -0.2 1,233,128 - -0.4 1,233,133 + +0.8 1,233,133 + +0.7 1,233,134 - +1.0 1,233,397 + ABID97_RS05835 0.28 -0.4 1,233,397 + ABID97_RS05835 0.28 -0.8 1,233,397 + ABID97_RS05835 0.28 -0.9 1,233,398 - ABID97_RS05835 0.28 -1.1 1,233,398 - ABID97_RS05835 0.28 -0.6 1,233,568 + ABID97_RS05835 0.48 -1.6 1,233,569 - ABID97_RS05835 0.48 +0.2 1,234,007 - +1.0 1,234,110 + +0.3 1,234,111 - +1.7
Or see this region's nucleotide sequence