Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05775

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05765 and ABID97_RS05770 are separated by 124 nucleotidesABID97_RS05770 and ABID97_RS05775 are separated by 132 nucleotidesABID97_RS05775 and ABID97_RS05780 are separated by 150 nucleotidesABID97_RS05780 and ABID97_RS05785 are separated by 126 nucleotides ABID97_RS05765: ABID97_RS05765 - UDP-glucose 4-epimerase GalE, at 1,219,114 to 1,220,133 _RS05765 ABID97_RS05770: ABID97_RS05770 - nucleoid occlusion factor SlmA, at 1,220,258 to 1,220,911 _RS05770 ABID97_RS05775: ABID97_RS05775 - catalase, at 1,221,044 to 1,222,567 _RS05775 ABID97_RS05780: ABID97_RS05780 - DUF1326 domain-containing protein, at 1,222,718 to 1,223,320 _RS05780 ABID97_RS05785: ABID97_RS05785 - DUF2182 domain-containing protein, at 1,223,447 to 1,224,253 _RS05785 Position (kb) 1221 1222 1223Strain fitness (log2 ratio) -1 0 1 2 3at 1220.170 kb on + strandat 1220.170 kb on + strandat 1220.170 kb on + strandat 1220.171 kb on - strandat 1220.237 kb on + strandat 1220.238 kb on - strandat 1220.238 kb on - strandat 1220.289 kb on + strandat 1220.465 kb on + strand, within ABID97_RS05770at 1220.466 kb on - strand, within ABID97_RS05770at 1220.910 kb on - strandat 1220.910 kb on - strandat 1221.255 kb on + strand, within ABID97_RS05775at 1221.392 kb on + strand, within ABID97_RS05775at 1221.392 kb on + strand, within ABID97_RS05775at 1221.393 kb on - strand, within ABID97_RS05775at 1221.410 kb on + strand, within ABID97_RS05775at 1221.410 kb on + strand, within ABID97_RS05775at 1221.410 kb on + strand, within ABID97_RS05775at 1221.410 kb on + strand, within ABID97_RS05775at 1221.410 kb on + strand, within ABID97_RS05775at 1221.410 kb on + strand, within ABID97_RS05775at 1221.411 kb on - strand, within ABID97_RS05775at 1221.411 kb on - strand, within ABID97_RS05775at 1221.411 kb on - strand, within ABID97_RS05775at 1221.411 kb on - strand, within ABID97_RS05775at 1221.411 kb on - strand, within ABID97_RS05775at 1221.609 kb on - strand, within ABID97_RS05775at 1221.683 kb on + strand, within ABID97_RS05775at 1221.683 kb on + strand, within ABID97_RS05775at 1221.684 kb on - strand, within ABID97_RS05775at 1221.684 kb on - strand, within ABID97_RS05775at 1221.857 kb on + strand, within ABID97_RS05775at 1221.857 kb on + strand, within ABID97_RS05775at 1221.857 kb on + strand, within ABID97_RS05775at 1221.858 kb on - strand, within ABID97_RS05775at 1221.905 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.956 kb on + strand, within ABID97_RS05775at 1221.957 kb on - strand, within ABID97_RS05775at 1221.957 kb on - strand, within ABID97_RS05775at 1221.957 kb on - strand, within ABID97_RS05775at 1221.957 kb on - strand, within ABID97_RS05775at 1222.055 kb on + strand, within ABID97_RS05775at 1222.055 kb on + strand, within ABID97_RS05775at 1222.056 kb on - strand, within ABID97_RS05775at 1222.056 kb on - strand, within ABID97_RS05775at 1222.139 kb on + strand, within ABID97_RS05775at 1222.139 kb on + strand, within ABID97_RS05775at 1222.140 kb on - strand, within ABID97_RS05775at 1222.140 kb on - strand, within ABID97_RS05775at 1222.140 kb on - strand, within ABID97_RS05775at 1222.140 kb on - strand, within ABID97_RS05775at 1222.140 kb on - strand, within ABID97_RS05775at 1222.193 kb on + strand, within ABID97_RS05775at 1222.193 kb on + strand, within ABID97_RS05775at 1222.194 kb on - strand, within ABID97_RS05775at 1222.194 kb on - strand, within ABID97_RS05775at 1222.194 kb on - strand, within ABID97_RS05775at 1222.194 kb on - strand, within ABID97_RS05775at 1222.194 kb on - strand, within ABID97_RS05775at 1222.437 kb on - strandat 1222.437 kb on - strandat 1222.437 kb on - strandat 1222.437 kb on - strandat 1222.460 kb on + strandat 1222.461 kb on - strandat 1222.645 kb on + strandat 1222.646 kb on - strandat 1222.717 kb on + strandat 1222.717 kb on + strandat 1222.717 kb on + strandat 1222.718 kb on - strandat 1222.724 kb on + strandat 1222.724 kb on + strandat 1222.724 kb on + strandat 1222.724 kb on + strandat 1222.724 kb on + strandat 1222.724 kb on + strandat 1222.725 kb on - strandat 1222.725 kb on - strandat 1222.725 kb on - strandat 1222.725 kb on - strandat 1222.725 kb on - strandat 1222.725 kb on - strandat 1222.991 kb on + strand, within ABID97_RS05780at 1222.992 kb on - strand, within ABID97_RS05780at 1222.992 kb on - strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.120 kb on + strand, within ABID97_RS05780at 1223.121 kb on - strand, within ABID97_RS05780at 1223.121 kb on - strand, within ABID97_RS05780at 1223.121 kb on - strand, within ABID97_RS05780at 1223.121 kb on - strand, within ABID97_RS05780at 1223.121 kb on - strand, within ABID97_RS05780at 1223.124 kb on - strand, within ABID97_RS05780at 1223.235 kb on - strand, within ABID97_RS05780

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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1,220,170 + -0.1
1,220,170 + -0.1
1,220,170 + +1.1
1,220,171 - +0.5
1,220,237 + +0.2
1,220,238 - -0.1
1,220,238 - -0.3
1,220,289 + +0.2
1,220,465 + ABID97_RS05770 0.32 -0.4
1,220,466 - ABID97_RS05770 0.32 -0.1
1,220,910 - +0.4
1,220,910 - -0.5
1,221,255 + ABID97_RS05775 0.14 +0.5
1,221,392 + ABID97_RS05775 0.23 -1.2
1,221,392 + ABID97_RS05775 0.23 +0.2
1,221,393 - ABID97_RS05775 0.23 -0.6
1,221,410 + ABID97_RS05775 0.24 -0.2
1,221,410 + ABID97_RS05775 0.24 +0.9
1,221,410 + ABID97_RS05775 0.24 +0.3
1,221,410 + ABID97_RS05775 0.24 +0.2
1,221,410 + ABID97_RS05775 0.24 +0.3
1,221,410 + ABID97_RS05775 0.24 -1.1
1,221,411 - ABID97_RS05775 0.24 +0.4
1,221,411 - ABID97_RS05775 0.24 -0.2
1,221,411 - ABID97_RS05775 0.24 -0.1
1,221,411 - ABID97_RS05775 0.24 +0.2
1,221,411 - ABID97_RS05775 0.24 -1.2
1,221,609 - ABID97_RS05775 0.37 +0.1
1,221,683 + ABID97_RS05775 0.42 +0.2
1,221,683 + ABID97_RS05775 0.42 -1.1
1,221,684 - ABID97_RS05775 0.42 +0.4
1,221,684 - ABID97_RS05775 0.42 -0.6
1,221,857 + ABID97_RS05775 0.53 +1.0
1,221,857 + ABID97_RS05775 0.53 +0.9
1,221,857 + ABID97_RS05775 0.53 -0.3
1,221,858 - ABID97_RS05775 0.53 +0.4
1,221,905 + ABID97_RS05775 0.56 +3.2
1,221,956 + ABID97_RS05775 0.60 +0.5
1,221,956 + ABID97_RS05775 0.60 +1.0
1,221,956 + ABID97_RS05775 0.60 -0.6
1,221,956 + ABID97_RS05775 0.60 +0.8
1,221,956 + ABID97_RS05775 0.60 -0.6
1,221,956 + ABID97_RS05775 0.60 -0.3
1,221,956 + ABID97_RS05775 0.60 -0.2
1,221,957 - ABID97_RS05775 0.60 -1.3
1,221,957 - ABID97_RS05775 0.60 -1.1
1,221,957 - ABID97_RS05775 0.60 +1.4
1,221,957 - ABID97_RS05775 0.60 -0.2
1,222,055 + ABID97_RS05775 0.66 +0.7
1,222,055 + ABID97_RS05775 0.66 -0.1
1,222,056 - ABID97_RS05775 0.66 +0.2
1,222,056 - ABID97_RS05775 0.66 -0.2
1,222,139 + ABID97_RS05775 0.72 +0.3
1,222,139 + ABID97_RS05775 0.72 +0.8
1,222,140 - ABID97_RS05775 0.72 -0.4
1,222,140 - ABID97_RS05775 0.72 -0.8
1,222,140 - ABID97_RS05775 0.72 +0.7
1,222,140 - ABID97_RS05775 0.72 +0.3
1,222,140 - ABID97_RS05775 0.72 -0.2
1,222,193 + ABID97_RS05775 0.75 +0.1
1,222,193 + ABID97_RS05775 0.75 +0.1
1,222,194 - ABID97_RS05775 0.75 -0.2
1,222,194 - ABID97_RS05775 0.75 +0.3
1,222,194 - ABID97_RS05775 0.75 -0.3
1,222,194 - ABID97_RS05775 0.75 -0.1
1,222,194 - ABID97_RS05775 0.75 -1.3
1,222,437 - -0.3
1,222,437 - -0.0
1,222,437 - +0.2
1,222,437 - +0.1
1,222,460 + -0.0
1,222,461 - -1.0
1,222,645 + +0.3
1,222,646 - -1.0
1,222,717 + +1.2
1,222,717 + +1.0
1,222,717 + -1.4
1,222,718 - -0.2
1,222,724 + +0.8
1,222,724 + +0.1
1,222,724 + +0.5
1,222,724 + +0.1
1,222,724 + +1.6
1,222,724 + +1.6
1,222,725 - -0.1
1,222,725 - -0.2
1,222,725 - +0.2
1,222,725 - +0.0
1,222,725 - +0.4
1,222,725 - +0.2
1,222,991 + ABID97_RS05780 0.45 +0.3
1,222,992 - ABID97_RS05780 0.45 +0.2
1,222,992 - ABID97_RS05780 0.45 +0.8
1,223,120 + ABID97_RS05780 0.67 +2.4
1,223,120 + ABID97_RS05780 0.67 +0.3
1,223,120 + ABID97_RS05780 0.67 +0.5
1,223,120 + ABID97_RS05780 0.67 +0.4
1,223,120 + ABID97_RS05780 0.67 +0.2
1,223,120 + ABID97_RS05780 0.67 +0.7
1,223,120 + ABID97_RS05780 0.67 +0.8
1,223,120 + ABID97_RS05780 0.67 +0.7
1,223,121 - ABID97_RS05780 0.67 -0.1
1,223,121 - ABID97_RS05780 0.67 +0.8
1,223,121 - ABID97_RS05780 0.67 -0.3
1,223,121 - ABID97_RS05780 0.67 +0.4
1,223,121 - ABID97_RS05780 0.67 +0.4
1,223,124 - ABID97_RS05780 0.67 +0.7
1,223,235 - ABID97_RS05780 0.86 -0.2

Or see this region's nucleotide sequence