Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05695 and ABID97_RS05700 are separated by 12 nucleotides ABID97_RS05700 and ABID97_RS05705 overlap by 4 nucleotides ABID97_RS05705 and ABID97_RS05710 are separated by 390 nucleotides
ABID97_RS05695: ABID97_RS05695 - class I SAM-dependent methyltransferase, at 1,199,923 to 1,200,678
_RS05695
ABID97_RS05700: ABID97_RS05700 - GDP-mannose 4,6-dehydratase, at 1,200,691 to 1,201,572
_RS05700
ABID97_RS05705: ABID97_RS05705 - GDP-mannose 4,6-dehydratase, at 1,201,569 to 1,202,606
_RS05705
ABID97_RS05710: ABID97_RS05710 - glycosyltransferase, at 1,202,997 to 1,207,046
_RS05710
Position (kb) 1201
1202
1203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1200.592 kb on + strand, within ABID97_RS05695 at 1200.592 kb on + strand, within ABID97_RS05695 at 1200.592 kb on + strand, within ABID97_RS05695 at 1200.593 kb on - strand, within ABID97_RS05695 at 1200.598 kb on + strand, within ABID97_RS05695 at 1200.692 kb on + strand at 1200.692 kb on + strand at 1200.693 kb on - strand at 1200.757 kb on + strand at 1200.758 kb on - strand at 1200.784 kb on + strand, within ABID97_RS05700 at 1200.785 kb on - strand, within ABID97_RS05700 at 1200.785 kb on - strand, within ABID97_RS05700 at 1200.785 kb on - strand, within ABID97_RS05700 at 1200.873 kb on + strand, within ABID97_RS05700 at 1200.873 kb on + strand, within ABID97_RS05700 at 1200.873 kb on + strand, within ABID97_RS05700 at 1200.873 kb on + strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.874 kb on - strand, within ABID97_RS05700 at 1200.904 kb on + strand, within ABID97_RS05700 at 1200.904 kb on + strand, within ABID97_RS05700 at 1200.904 kb on + strand, within ABID97_RS05700 at 1200.905 kb on - strand, within ABID97_RS05700 at 1200.944 kb on + strand, within ABID97_RS05700 at 1200.944 kb on + strand, within ABID97_RS05700 at 1200.945 kb on - strand, within ABID97_RS05700 at 1200.983 kb on + strand, within ABID97_RS05700 at 1200.983 kb on + strand, within ABID97_RS05700 at 1200.983 kb on + strand, within ABID97_RS05700 at 1200.983 kb on + strand, within ABID97_RS05700 at 1200.983 kb on + strand, within ABID97_RS05700 at 1200.984 kb on - strand, within ABID97_RS05700 at 1200.984 kb on - strand, within ABID97_RS05700 at 1200.984 kb on - strand, within ABID97_RS05700 at 1201.121 kb on + strand, within ABID97_RS05700 at 1201.121 kb on + strand, within ABID97_RS05700 at 1201.122 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.179 kb on - strand, within ABID97_RS05700 at 1201.205 kb on + strand, within ABID97_RS05700 at 1201.205 kb on + strand, within ABID97_RS05700 at 1201.206 kb on - strand, within ABID97_RS05700 at 1201.265 kb on + strand, within ABID97_RS05700 at 1201.265 kb on + strand, within ABID97_RS05700 at 1201.265 kb on + strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.266 kb on - strand, within ABID97_RS05700 at 1201.364 kb on + strand, within ABID97_RS05700 at 1201.364 kb on + strand, within ABID97_RS05700 at 1201.364 kb on + strand, within ABID97_RS05700 at 1201.365 kb on - strand, within ABID97_RS05700 at 1201.365 kb on - strand, within ABID97_RS05700 at 1201.517 kb on + strand at 1201.517 kb on + strand at 1201.517 kb on + strand at 1201.872 kb on + strand, within ABID97_RS05705 at 1201.872 kb on + strand, within ABID97_RS05705 at 1201.872 kb on + strand, within ABID97_RS05705 at 1201.872 kb on + strand, within ABID97_RS05705 at 1201.872 kb on + strand, within ABID97_RS05705 at 1201.873 kb on - strand, within ABID97_RS05705 at 1201.873 kb on - strand, within ABID97_RS05705 at 1201.873 kb on - strand, within ABID97_RS05705 at 1201.873 kb on - strand, within ABID97_RS05705 at 1201.873 kb on - strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.876 kb on + strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.877 kb on - strand, within ABID97_RS05705 at 1201.924 kb on + strand, within ABID97_RS05705 at 1201.924 kb on + strand, within ABID97_RS05705 at 1201.924 kb on + strand, within ABID97_RS05705 at 1201.924 kb on + strand, within ABID97_RS05705 at 1201.924 kb on + strand, within ABID97_RS05705 at 1201.925 kb on - strand, within ABID97_RS05705 at 1201.925 kb on - strand, within ABID97_RS05705 at 1201.925 kb on - strand, within ABID97_RS05705 at 1201.925 kb on - strand, within ABID97_RS05705 at 1202.098 kb on + strand, within ABID97_RS05705 at 1202.098 kb on + strand, within ABID97_RS05705 at 1202.099 kb on - strand, within ABID97_RS05705 at 1202.099 kb on - strand, within ABID97_RS05705 at 1202.111 kb on - strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.134 kb on + strand, within ABID97_RS05705 at 1202.167 kb on + strand, within ABID97_RS05705 at 1202.236 kb on + strand, within ABID97_RS05705 at 1202.237 kb on - strand, within ABID97_RS05705 at 1202.237 kb on - strand, within ABID97_RS05705 at 1202.237 kb on - strand, within ABID97_RS05705 at 1202.365 kb on + strand, within ABID97_RS05705 at 1202.366 kb on - strand, within ABID97_RS05705 at 1202.366 kb on - strand, within ABID97_RS05705 at 1202.428 kb on + strand, within ABID97_RS05705 at 1202.428 kb on + strand, within ABID97_RS05705 at 1202.429 kb on - strand, within ABID97_RS05705 at 1202.510 kb on - strand at 1202.510 kb on - strand at 1202.527 kb on + strand at 1202.528 kb on - strand at 1202.528 kb on - strand at 1202.557 kb on + strand at 1202.557 kb on + strand at 1202.557 kb on + strand at 1202.557 kb on + strand at 1202.557 kb on + strand at 1202.557 kb on + strand at 1202.558 kb on - strand at 1202.585 kb on + strand at 1202.585 kb on + strand at 1202.586 kb on - strand at 1202.586 kb on - strand at 1202.590 kb on - strand at 1202.622 kb on - strand at 1202.625 kb on - strand at 1202.720 kb on + strand at 1202.720 kb on + strand at 1202.721 kb on - strand at 1202.721 kb on - strand at 1202.723 kb on + strand at 1202.723 kb on + strand at 1202.723 kb on + strand at 1202.723 kb on + strand at 1202.723 kb on + strand at 1202.724 kb on - strand at 1202.732 kb on + strand at 1202.733 kb on - strand at 1202.733 kb on - strand at 1202.733 kb on - strand at 1202.739 kb on + strand at 1202.743 kb on + strand at 1202.744 kb on - strand at 1202.744 kb on - strand at 1202.744 kb on - strand at 1202.744 kb on - strand at 1202.744 kb on - strand at 1202.744 kb on - strand at 1202.762 kb on + strand at 1202.762 kb on + strand at 1202.763 kb on - strand at 1202.763 kb on - strand at 1202.812 kb on + strand at 1202.813 kb on - strand at 1202.838 kb on + strand at 1202.838 kb on + strand at 1202.838 kb on + strand at 1202.838 kb on + strand at 1202.838 kb on + strand at 1202.839 kb on - strand at 1202.839 kb on - strand at 1202.839 kb on - strand at 1202.882 kb on - strand at 1202.884 kb on + strand at 1202.884 kb on + strand at 1202.884 kb on + strand at 1202.884 kb on + strand at 1202.885 kb on - strand at 1202.885 kb on - strand at 1202.885 kb on - strand at 1202.888 kb on + strand at 1202.888 kb on + strand at 1202.888 kb on + strand at 1202.888 kb on + strand at 1202.889 kb on - strand at 1202.889 kb on - strand at 1202.889 kb on - strand at 1202.906 kb on + strand at 1202.906 kb on + strand at 1202.906 kb on + strand at 1202.907 kb on - strand at 1202.971 kb on + strand at 1202.971 kb on + strand at 1202.971 kb on + strand at 1202.972 kb on - strand at 1202.972 kb on - strand at 1202.972 kb on - strand at 1202.972 kb on - strand at 1202.972 kb on - strand at 1202.972 kb on - strand at 1202.972 kb on - strand at 1202.983 kb on + strand at 1202.983 kb on + strand at 1202.984 kb on - strand at 1202.984 kb on - strand at 1202.984 kb on - strand at 1202.996 kb on + strand at 1202.996 kb on + strand at 1202.997 kb on - strand at 1202.997 kb on - strand at 1202.997 kb on - strand at 1202.997 kb on - strand at 1202.997 kb on - strand at 1203.091 kb on + strand at 1203.091 kb on + strand at 1203.091 kb on + strand at 1203.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,200,592 + ABID97_RS05695 0.88 +0.3 1,200,592 + ABID97_RS05695 0.88 -0.4 1,200,592 + ABID97_RS05695 0.88 -0.2 1,200,593 - ABID97_RS05695 0.89 -0.4 1,200,598 + ABID97_RS05695 0.89 -1.2 1,200,692 + +0.9 1,200,692 + -0.1 1,200,693 - -0.5 1,200,757 + -0.3 1,200,758 - +0.6 1,200,784 + ABID97_RS05700 0.11 +0.3 1,200,785 - ABID97_RS05700 0.11 +0.4 1,200,785 - ABID97_RS05700 0.11 +1.8 1,200,785 - ABID97_RS05700 0.11 +1.0 1,200,873 + ABID97_RS05700 0.21 +1.4 1,200,873 + ABID97_RS05700 0.21 +0.8 1,200,873 + ABID97_RS05700 0.21 +0.9 1,200,873 + ABID97_RS05700 0.21 +1.2 1,200,874 - ABID97_RS05700 0.21 +0.8 1,200,874 - ABID97_RS05700 0.21 +0.9 1,200,874 - ABID97_RS05700 0.21 +1.3 1,200,874 - ABID97_RS05700 0.21 -0.0 1,200,874 - ABID97_RS05700 0.21 -0.3 1,200,874 - ABID97_RS05700 0.21 +0.2 1,200,874 - ABID97_RS05700 0.21 +2.0 1,200,904 + ABID97_RS05700 0.24 +0.4 1,200,904 + ABID97_RS05700 0.24 +1.3 1,200,904 + ABID97_RS05700 0.24 +1.8 1,200,905 - ABID97_RS05700 0.24 +1.5 1,200,944 + ABID97_RS05700 0.29 +1.3 1,200,944 + ABID97_RS05700 0.29 +0.7 1,200,945 - ABID97_RS05700 0.29 +0.7 1,200,983 + ABID97_RS05700 0.33 +0.5 1,200,983 + ABID97_RS05700 0.33 +0.3 1,200,983 + ABID97_RS05700 0.33 +0.9 1,200,983 + ABID97_RS05700 0.33 +0.6 1,200,983 + ABID97_RS05700 0.33 -0.3 1,200,984 - ABID97_RS05700 0.33 +1.5 1,200,984 - ABID97_RS05700 0.33 +0.3 1,200,984 - ABID97_RS05700 0.33 +0.2 1,201,121 + ABID97_RS05700 0.49 +0.7 1,201,121 + ABID97_RS05700 0.49 +1.6 1,201,122 - ABID97_RS05700 0.49 +0.9 1,201,179 - ABID97_RS05700 0.55 +0.7 1,201,179 - ABID97_RS05700 0.55 +0.2 1,201,179 - ABID97_RS05700 0.55 -0.1 1,201,179 - ABID97_RS05700 0.55 +1.7 1,201,179 - ABID97_RS05700 0.55 +1.5 1,201,179 - ABID97_RS05700 0.55 -1.3 1,201,179 - ABID97_RS05700 0.55 -0.1 1,201,205 + ABID97_RS05700 0.58 +2.0 1,201,205 + ABID97_RS05700 0.58 +1.3 1,201,206 - ABID97_RS05700 0.58 +1.4 1,201,265 + ABID97_RS05700 0.65 -0.2 1,201,265 + ABID97_RS05700 0.65 -0.9 1,201,265 + ABID97_RS05700 0.65 +2.8 1,201,266 - ABID97_RS05700 0.65 +0.8 1,201,266 - ABID97_RS05700 0.65 +0.2 1,201,266 - ABID97_RS05700 0.65 +0.0 1,201,266 - ABID97_RS05700 0.65 +1.1 1,201,266 - ABID97_RS05700 0.65 +0.5 1,201,266 - ABID97_RS05700 0.65 +1.6 1,201,266 - ABID97_RS05700 0.65 +0.2 1,201,266 - ABID97_RS05700 0.65 +0.5 1,201,364 + ABID97_RS05700 0.76 +0.8 1,201,364 + ABID97_RS05700 0.76 +1.4 1,201,364 + ABID97_RS05700 0.76 +0.8 1,201,365 - ABID97_RS05700 0.76 -0.2 1,201,365 - ABID97_RS05700 0.76 +0.9 1,201,517 + +1.7 1,201,517 + +1.5 1,201,517 + +0.6 1,201,872 + ABID97_RS05705 0.29 +1.0 1,201,872 + ABID97_RS05705 0.29 +1.4 1,201,872 + ABID97_RS05705 0.29 +2.2 1,201,872 + ABID97_RS05705 0.29 +0.9 1,201,872 + ABID97_RS05705 0.29 +2.2 1,201,873 - ABID97_RS05705 0.29 +1.2 1,201,873 - ABID97_RS05705 0.29 +0.9 1,201,873 - ABID97_RS05705 0.29 +0.6 1,201,873 - ABID97_RS05705 0.29 +0.9 1,201,873 - ABID97_RS05705 0.29 +0.4 1,201,876 + ABID97_RS05705 0.30 +1.0 1,201,876 + ABID97_RS05705 0.30 +1.1 1,201,876 + ABID97_RS05705 0.30 +0.5 1,201,876 + ABID97_RS05705 0.30 -0.8 1,201,876 + ABID97_RS05705 0.30 +1.7 1,201,876 + ABID97_RS05705 0.30 +0.7 1,201,876 + ABID97_RS05705 0.30 +1.3 1,201,876 + ABID97_RS05705 0.30 +1.1 1,201,876 + ABID97_RS05705 0.30 +1.6 1,201,876 + ABID97_RS05705 0.30 +0.8 1,201,877 - ABID97_RS05705 0.30 +0.9 1,201,877 - ABID97_RS05705 0.30 +0.7 1,201,877 - ABID97_RS05705 0.30 +0.7 1,201,877 - ABID97_RS05705 0.30 +1.1 1,201,877 - ABID97_RS05705 0.30 +1.4 1,201,877 - ABID97_RS05705 0.30 +1.6 1,201,877 - ABID97_RS05705 0.30 +0.5 1,201,877 - ABID97_RS05705 0.30 +1.2 1,201,877 - ABID97_RS05705 0.30 +1.0 1,201,877 - ABID97_RS05705 0.30 +1.5 1,201,877 - ABID97_RS05705 0.30 +0.2 1,201,877 - ABID97_RS05705 0.30 +1.8 1,201,877 - ABID97_RS05705 0.30 +1.0 1,201,924 + ABID97_RS05705 0.34 +1.4 1,201,924 + ABID97_RS05705 0.34 +0.8 1,201,924 + ABID97_RS05705 0.34 +1.4 1,201,924 + ABID97_RS05705 0.34 +1.6 1,201,924 + ABID97_RS05705 0.34 +0.9 1,201,925 - ABID97_RS05705 0.34 +1.9 1,201,925 - ABID97_RS05705 0.34 +0.9 1,201,925 - ABID97_RS05705 0.34 +0.0 1,201,925 - ABID97_RS05705 0.34 +1.1 1,202,098 + ABID97_RS05705 0.51 +1.2 1,202,098 + ABID97_RS05705 0.51 +1.6 1,202,099 - ABID97_RS05705 0.51 +0.7 1,202,099 - ABID97_RS05705 0.51 +0.6 1,202,111 - ABID97_RS05705 0.52 +0.3 1,202,134 + ABID97_RS05705 0.54 +1.0 1,202,134 + ABID97_RS05705 0.54 +0.5 1,202,134 + ABID97_RS05705 0.54 +2.4 1,202,134 + ABID97_RS05705 0.54 +0.5 1,202,134 + ABID97_RS05705 0.54 +0.3 1,202,134 + ABID97_RS05705 0.54 +1.3 1,202,134 + ABID97_RS05705 0.54 +1.2 1,202,167 + ABID97_RS05705 0.58 +1.1 1,202,236 + ABID97_RS05705 0.64 +0.2 1,202,237 - ABID97_RS05705 0.64 +1.0 1,202,237 - ABID97_RS05705 0.64 +1.4 1,202,237 - ABID97_RS05705 0.64 +0.4 1,202,365 + ABID97_RS05705 0.77 +1.2 1,202,366 - ABID97_RS05705 0.77 +1.5 1,202,366 - ABID97_RS05705 0.77 +0.2 1,202,428 + ABID97_RS05705 0.83 +1.0 1,202,428 + ABID97_RS05705 0.83 +1.1 1,202,429 - ABID97_RS05705 0.83 +0.7 1,202,510 - +0.6 1,202,510 - +0.6 1,202,527 + +1.5 1,202,528 - +0.3 1,202,528 - +0.9 1,202,557 + +1.1 1,202,557 + +0.4 1,202,557 + +1.0 1,202,557 + +1.5 1,202,557 + +1.9 1,202,557 + +1.3 1,202,558 - +2.0 1,202,585 + +1.7 1,202,585 + +2.0 1,202,586 - +1.2 1,202,586 - +1.2 1,202,590 - +1.1 1,202,622 - +0.3 1,202,625 - -0.8 1,202,720 + +0.6 1,202,720 + -0.2 1,202,721 - -0.2 1,202,721 - +0.2 1,202,723 + -0.0 1,202,723 + -1.2 1,202,723 + +0.4 1,202,723 + -0.0 1,202,723 + -3.2 1,202,724 - -0.4 1,202,732 + -0.2 1,202,733 - -0.4 1,202,733 - -0.6 1,202,733 - -0.0 1,202,739 + -0.1 1,202,743 + -0.7 1,202,744 - +0.1 1,202,744 - -0.1 1,202,744 - -0.6 1,202,744 - +0.2 1,202,744 - +0.6 1,202,744 - -0.1 1,202,762 + +0.3 1,202,762 + +0.2 1,202,763 - -0.4 1,202,763 - -0.4 1,202,812 + +0.1 1,202,813 - +0.5 1,202,838 + +3.2 1,202,838 + +1.0 1,202,838 + +0.4 1,202,838 + -2.2 1,202,838 + +0.0 1,202,839 - -1.3 1,202,839 - -0.2 1,202,839 - -0.6 1,202,882 - -1.4 1,202,884 + -0.5 1,202,884 + -0.2 1,202,884 + -1.0 1,202,884 + -0.2 1,202,885 - -0.9 1,202,885 - +0.1 1,202,885 - +0.2 1,202,888 + +0.1 1,202,888 + -0.9 1,202,888 + +0.2 1,202,888 + +1.2 1,202,889 - -0.4 1,202,889 - -0.8 1,202,889 - +0.5 1,202,906 + +0.1 1,202,906 + +0.0 1,202,906 + -0.3 1,202,907 - -1.6 1,202,971 + -1.0 1,202,971 + -0.4 1,202,971 + -0.1 1,202,972 - -0.2 1,202,972 - -0.5 1,202,972 - +0.0 1,202,972 - -0.3 1,202,972 - -1.9 1,202,972 - +0.4 1,202,972 - -0.6 1,202,983 + +0.9 1,202,983 + -0.1 1,202,984 - -0.3 1,202,984 - +0.1 1,202,984 - -0.3 1,202,996 + -0.5 1,202,996 + -0.4 1,202,997 - +0.2 1,202,997 - -0.4 1,202,997 - -1.5 1,202,997 - -0.6 1,202,997 - +0.9 1,203,091 + +0.2 1,203,091 + -0.2 1,203,091 + +0.5 1,203,091 + +0.4
Or see this region's nucleotide sequence