Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04605

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04600 and ABID97_RS04605 are separated by 120 nucleotidesABID97_RS04605 and ABID97_RS04610 are separated by 178 nucleotides ABID97_RS04600: ABID97_RS04600 - glutamate-5-semialdehyde dehydrogenase, at 957,763 to 959,055 _RS04600 ABID97_RS04605: ABID97_RS04605 - glutamate--cysteine ligase, at 959,176 to 960,483 _RS04605 ABID97_RS04610: ABID97_RS04610 - potassium transporter Kup, at 960,662 to 962,533 _RS04610 Position (kb) 959 960 961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 959.092 kb on + strandat 959.092 kb on + strandat 959.093 kb on - strandat 959.096 kb on + strandat 959.097 kb on - strandat 959.131 kb on - strandat 959.143 kb on + strandat 959.143 kb on + strandat 959.144 kb on - strandat 959.144 kb on - strandat 959.153 kb on + strandat 959.234 kb on + strandat 959.500 kb on + strand, within ABID97_RS04605at 959.500 kb on + strand, within ABID97_RS04605at 959.501 kb on - strand, within ABID97_RS04605at 959.752 kb on + strand, within ABID97_RS04605at 959.752 kb on + strand, within ABID97_RS04605at 959.752 kb on + strand, within ABID97_RS04605at 959.753 kb on - strand, within ABID97_RS04605at 959.753 kb on - strand, within ABID97_RS04605at 959.753 kb on - strand, within ABID97_RS04605at 959.815 kb on + strand, within ABID97_RS04605at 959.815 kb on + strand, within ABID97_RS04605at 959.816 kb on - strand, within ABID97_RS04605at 959.816 kb on - strand, within ABID97_RS04605at 959.881 kb on + strand, within ABID97_RS04605at 959.881 kb on + strand, within ABID97_RS04605at 959.881 kb on + strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.977 kb on + strand, within ABID97_RS04605at 959.977 kb on + strand, within ABID97_RS04605at 959.977 kb on + strand, within ABID97_RS04605at 959.978 kb on - strand, within ABID97_RS04605at 959.986 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.224 kb on - strand, within ABID97_RS04605at 960.224 kb on - strand, within ABID97_RS04605at 960.394 kb on + strandat 960.394 kb on + strandat 960.394 kb on + strandat 960.394 kb on + strandat 960.394 kb on + strandat 960.395 kb on - strandat 960.395 kb on - strandat 960.395 kb on - strandat 960.395 kb on - strandat 960.400 kb on + strandat 960.401 kb on - strandat 960.401 kb on - strandat 960.401 kb on - strandat 960.439 kb on + strandat 960.439 kb on + strandat 960.439 kb on + strandat 960.440 kb on - strandat 960.440 kb on - strandat 960.440 kb on - strandat 960.440 kb on - strandat 960.526 kb on + strandat 960.526 kb on + strandat 960.723 kb on - strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.860 kb on + strand, within ABID97_RS04610at 960.860 kb on + strand, within ABID97_RS04610at 960.860 kb on + strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 961.005 kb on - strand, within ABID97_RS04610at 961.005 kb on - strand, within ABID97_RS04610at 961.088 kb on + strand, within ABID97_RS04610at 961.089 kb on - strand, within ABID97_RS04610at 961.089 kb on - strand, within ABID97_RS04610at 961.439 kb on + strand, within ABID97_RS04610

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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959,092 + +0.2
959,092 + +0.1
959,093 - +0.0
959,096 + +0.1
959,097 - -0.7
959,131 - +1.2
959,143 + -1.4
959,143 + -0.4
959,144 - -0.4
959,144 - -1.1
959,153 + +0.0
959,234 + -2.5
959,500 + ABID97_RS04605 0.25 +1.3
959,500 + ABID97_RS04605 0.25 -2.8
959,501 - ABID97_RS04605 0.25 -1.8
959,752 + ABID97_RS04605 0.44 -1.8
959,752 + ABID97_RS04605 0.44 -1.1
959,752 + ABID97_RS04605 0.44 -1.9
959,753 - ABID97_RS04605 0.44 -2.7
959,753 - ABID97_RS04605 0.44 -0.5
959,753 - ABID97_RS04605 0.44 -2.5
959,815 + ABID97_RS04605 0.49 -1.7
959,815 + ABID97_RS04605 0.49 -2.0
959,816 - ABID97_RS04605 0.49 +0.2
959,816 - ABID97_RS04605 0.49 -2.4
959,881 + ABID97_RS04605 0.54 +0.4
959,881 + ABID97_RS04605 0.54 -0.8
959,881 + ABID97_RS04605 0.54 -1.4
959,882 - ABID97_RS04605 0.54 -2.2
959,882 - ABID97_RS04605 0.54 -3.1
959,882 - ABID97_RS04605 0.54 -2.8
959,882 - ABID97_RS04605 0.54 -2.4
959,882 - ABID97_RS04605 0.54 -2.0
959,977 + ABID97_RS04605 0.61 -1.7
959,977 + ABID97_RS04605 0.61 -1.1
959,977 + ABID97_RS04605 0.61 -1.9
959,978 - ABID97_RS04605 0.61 +0.0
959,986 + ABID97_RS04605 0.62 -1.9
960,223 + ABID97_RS04605 0.80 -2.7
960,223 + ABID97_RS04605 0.80 -2.8
960,223 + ABID97_RS04605 0.80 -1.0
960,223 + ABID97_RS04605 0.80 -1.5
960,223 + ABID97_RS04605 0.80 -2.2
960,224 - ABID97_RS04605 0.80 -2.1
960,224 - ABID97_RS04605 0.80 -1.6
960,394 + -2.2
960,394 + -1.9
960,394 + -0.5
960,394 + -1.1
960,394 + -1.5
960,395 - -1.5
960,395 - -4.0
960,395 - -2.9
960,395 - -2.7
960,400 + -3.8
960,401 - -2.9
960,401 - -1.7
960,401 - -1.1
960,439 + -1.3
960,439 + -3.0
960,439 + -2.0
960,440 - -2.0
960,440 - -4.0
960,440 - +0.8
960,440 - +1.6
960,526 + +0.0
960,526 + +0.2
960,723 - +0.1
960,749 + -0.3
960,749 + -0.2
960,749 + +0.3
960,749 + -0.2
960,749 + -2.4
960,860 + ABID97_RS04610 0.11 -0.1
960,860 + ABID97_RS04610 0.11 -0.8
960,860 + ABID97_RS04610 0.11 -0.8
960,861 - ABID97_RS04610 0.11 -0.3
960,861 - ABID97_RS04610 0.11 +1.3
960,861 - ABID97_RS04610 0.11 -0.6
960,861 - ABID97_RS04610 0.11 -1.8
961,005 - ABID97_RS04610 0.18 -1.4
961,005 - ABID97_RS04610 0.18 -0.1
961,088 + ABID97_RS04610 0.23 -0.4
961,089 - ABID97_RS04610 0.23 -1.3
961,089 - ABID97_RS04610 0.23 -1.0
961,439 + ABID97_RS04610 0.42 -0.4

Or see this region's nucleotide sequence