Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04510 and ABID97_RS04515 are separated by 148 nucleotides ABID97_RS04515 and ABID97_RS04520 are separated by 10 nucleotides ABID97_RS04520 and ABID97_RS04525 are separated by 20 nucleotides ABID97_RS04525 and ABID97_RS04530 are separated by 43 nucleotides
ABID97_RS04510: ABID97_RS04510 - outer membrane protein assembly factor BamE, at 934,350 to 934,913
_RS04510
ABID97_RS04515: ABID97_RS04515 - 4-hydroxy-tetrahydrodipicolinate reductase, at 935,062 to 935,862
_RS04515
ABID97_RS04520: ABID97_RS04520 - MotA/TolQ/ExbB proton channel family protein, at 935,873 to 936,580
_RS04520
ABID97_RS04525: ABID97_RS04525 - biopolymer transporter ExbD, at 936,601 to 937,071
_RS04525
ABID97_RS04530: ABID97_RS04530 - glycogen/starch/alpha-glucan phosphorylase, at 937,115 to 939,598
_RS04530
Position (kb) 935
936
937 Strain fitness (log2 ratio) -1
0
1 at 936.314 kb on + strand, within ABID97_RS04520 at 936.315 kb on - strand, within ABID97_RS04520 at 936.444 kb on - strand, within ABID97_RS04520 at 936.579 kb on - strand at 936.970 kb on + strand, within ABID97_RS04525 at 937.116 kb on + strand at 937.158 kb on + strand at 937.158 kb on + strand at 937.159 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.287 kb on + strand at 937.306 kb on - strand at 937.335 kb on + strand at 937.335 kb on + strand at 937.335 kb on + strand at 937.335 kb on + strand at 937.336 kb on - strand at 937.336 kb on - strand at 937.425 kb on + strand, within ABID97_RS04530 at 937.425 kb on + strand, within ABID97_RS04530 at 937.425 kb on + strand, within ABID97_RS04530 at 937.426 kb on - strand, within ABID97_RS04530 at 937.426 kb on - strand, within ABID97_RS04530
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 936,314 + ABID97_RS04520 0.62 -0.1 936,315 - ABID97_RS04520 0.62 -1.0 936,444 - ABID97_RS04520 0.81 -0.5 936,579 - +0.2 936,970 + ABID97_RS04525 0.78 -0.7 937,116 + +1.3 937,158 + -0.2 937,158 + +0.0 937,159 - -0.0 937,279 - -0.3 937,279 - -0.1 937,279 - -0.4 937,287 + -1.4 937,306 - +0.5 937,335 + -0.1 937,335 + -0.5 937,335 + -0.8 937,335 + -1.1 937,336 - +0.8 937,336 - -0.8 937,425 + ABID97_RS04530 0.12 +0.6 937,425 + ABID97_RS04530 0.12 -1.0 937,425 + ABID97_RS04530 0.12 -0.1 937,426 - ABID97_RS04530 0.13 -0.7 937,426 - ABID97_RS04530 0.13 -0.4
Or see this region's nucleotide sequence