Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04285 and ABID97_RS04290 are separated by 30 nucleotides ABID97_RS04290 and ABID97_RS04295 are separated by 134 nucleotides ABID97_RS04295 and ABID97_RS04300 are separated by 12 nucleotides ABID97_RS04300 and ABID97_RS04305 overlap by 4 nucleotides
ABID97_RS04285: ABID97_RS04285 - acyl-CoA thioesterase II, at 880,639 to 881,517
_RS04285
ABID97_RS04290: ABID97_RS04290 - glutathione S-transferase, at 881,548 to 882,156
_RS04290
ABID97_RS04295: ABID97_RS04295 - SDR family oxidoreductase, at 882,291 to 883,004
_RS04295
ABID97_RS04300: ABID97_RS04300 - ABC transporter ATP-binding protein, at 883,017 to 883,742
_RS04300
ABID97_RS04305: ABID97_RS04305 - ABC transporter ATP-binding protein, at 883,739 to 884,494
_RS04305
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1 at 881.395 kb on + strand, within ABID97_RS04285 at 881.395 kb on + strand, within ABID97_RS04285 at 881.395 kb on + strand, within ABID97_RS04285 at 881.396 kb on - strand, within ABID97_RS04285 at 881.396 kb on - strand, within ABID97_RS04285 at 881.396 kb on - strand, within ABID97_RS04285 at 881.527 kb on + strand at 881.765 kb on - strand, within ABID97_RS04290 at 881.882 kb on - strand, within ABID97_RS04290 at 882.139 kb on - strand at 882.139 kb on - strand at 882.139 kb on - strand at 882.215 kb on + strand at 882.615 kb on + strand, within ABID97_RS04295 at 882.616 kb on - strand, within ABID97_RS04295 at 882.792 kb on + strand, within ABID97_RS04295 at 882.793 kb on - strand, within ABID97_RS04295 at 882.951 kb on + strand at 883.031 kb on - strand at 883.144 kb on + strand, within ABID97_RS04300 at 883.145 kb on - strand, within ABID97_RS04300 at 883.370 kb on - strand, within ABID97_RS04300 at 883.770 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 881,395 + ABID97_RS04285 0.86 +0.7 881,395 + ABID97_RS04285 0.86 +0.0 881,395 + ABID97_RS04285 0.86 +0.2 881,396 - ABID97_RS04285 0.86 +0.4 881,396 - ABID97_RS04285 0.86 -0.4 881,396 - ABID97_RS04285 0.86 -0.2 881,527 + -0.3 881,765 - ABID97_RS04290 0.36 -0.4 881,882 - ABID97_RS04290 0.55 -1.6 882,139 - -0.2 882,139 - -0.3 882,139 - +0.6 882,215 + -0.2 882,615 + ABID97_RS04295 0.45 +0.0 882,616 - ABID97_RS04295 0.46 -1.1 882,792 + ABID97_RS04295 0.70 -0.4 882,793 - ABID97_RS04295 0.70 -0.1 882,951 + -0.6 883,031 - +0.4 883,144 + ABID97_RS04300 0.17 +0.2 883,145 - ABID97_RS04300 0.18 -0.7 883,370 - ABID97_RS04300 0.49 -0.3 883,770 + -0.3
Or see this region's nucleotide sequence