Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04100 and ABID97_RS04105 are separated by 6 nucleotides ABID97_RS04105 and ABID97_RS04110 are separated by 13 nucleotides ABID97_RS04110 and ABID97_RS04115 are separated by 194 nucleotides
ABID97_RS04100: ABID97_RS04100 - chromate efflux transporter, at 841,444 to 842,790
_RS04100
ABID97_RS04105: ABID97_RS04105 - tripartite tricarboxylate transporter permease, at 842,797 to 844,308
_RS04105
ABID97_RS04110: ABID97_RS04110 - tripartite tricarboxylate transporter TctB family protein, at 844,322 to 844,810
_RS04110
ABID97_RS04115: ABID97_RS04115 - RNA-binding protein, at 845,005 to 845,418
_RS04115
Position (kb) 842
843
844
845 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 841.984 kb on + strand, within ABID97_RS04100 at 842.275 kb on + strand, within ABID97_RS04100 at 842.276 kb on - strand, within ABID97_RS04100 at 842.276 kb on - strand, within ABID97_RS04100 at 842.302 kb on + strand, within ABID97_RS04100 at 842.302 kb on + strand, within ABID97_RS04100 at 843.137 kb on + strand, within ABID97_RS04105 at 843.137 kb on + strand, within ABID97_RS04105 at 843.137 kb on + strand, within ABID97_RS04105 at 844.104 kb on - strand, within ABID97_RS04105 at 844.107 kb on - strand, within ABID97_RS04105 at 844.107 kb on - strand, within ABID97_RS04105 at 844.107 kb on - strand, within ABID97_RS04105 at 844.152 kb on - strand, within ABID97_RS04105 at 844.152 kb on - strand, within ABID97_RS04105 at 844.152 kb on - strand, within ABID97_RS04105 at 844.244 kb on + strand at 844.244 kb on + strand at 844.245 kb on - strand at 844.245 kb on - strand at 844.245 kb on - strand at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.476 kb on + strand, within ABID97_RS04110 at 844.476 kb on + strand, within ABID97_RS04110 at 844.477 kb on - strand, within ABID97_RS04110 at 844.477 kb on - strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 845.006 kb on + strand at 845.006 kb on + strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.010 kb on - strand at 845.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 841,984 + ABID97_RS04100 0.40 +1.3 842,275 + ABID97_RS04100 0.62 -0.0 842,276 - ABID97_RS04100 0.62 -0.2 842,276 - ABID97_RS04100 0.62 +3.3 842,302 + ABID97_RS04100 0.64 +0.2 842,302 + ABID97_RS04100 0.64 +0.5 843,137 + ABID97_RS04105 0.22 -0.2 843,137 + ABID97_RS04105 0.22 +0.5 843,137 + ABID97_RS04105 0.22 +0.3 844,104 - ABID97_RS04105 0.86 +0.2 844,107 - ABID97_RS04105 0.87 -0.3 844,107 - ABID97_RS04105 0.87 +0.5 844,107 - ABID97_RS04105 0.87 +0.6 844,152 - ABID97_RS04105 0.90 -2.0 844,152 - ABID97_RS04105 0.90 +1.2 844,152 - ABID97_RS04105 0.90 +0.3 844,244 + +0.7 844,244 + +1.6 844,245 - +0.2 844,245 - +0.4 844,245 - +0.3 844,386 + ABID97_RS04110 0.13 +0.5 844,386 + ABID97_RS04110 0.13 +0.9 844,386 + ABID97_RS04110 0.13 +0.5 844,386 + ABID97_RS04110 0.13 +0.0 844,386 + ABID97_RS04110 0.13 +0.4 844,387 - ABID97_RS04110 0.13 +0.2 844,387 - ABID97_RS04110 0.13 -0.7 844,387 - ABID97_RS04110 0.13 -0.3 844,387 - ABID97_RS04110 0.13 +0.6 844,387 - ABID97_RS04110 0.13 +0.3 844,387 - ABID97_RS04110 0.13 +0.9 844,387 - ABID97_RS04110 0.13 -0.2 844,387 - ABID97_RS04110 0.13 +1.5 844,476 + ABID97_RS04110 0.31 +0.8 844,476 + ABID97_RS04110 0.31 +0.3 844,477 - ABID97_RS04110 0.32 +0.4 844,477 - ABID97_RS04110 0.32 +0.5 844,725 + ABID97_RS04110 0.82 +0.7 844,725 + ABID97_RS04110 0.82 +0.4 844,725 + ABID97_RS04110 0.82 +1.0 844,725 + ABID97_RS04110 0.82 -0.1 844,725 + ABID97_RS04110 0.82 +0.5 844,725 + ABID97_RS04110 0.82 +0.4 844,726 - ABID97_RS04110 0.83 +0.5 844,726 - ABID97_RS04110 0.83 +0.2 844,726 - ABID97_RS04110 0.83 -0.5 844,726 - ABID97_RS04110 0.83 +1.0 844,726 - ABID97_RS04110 0.83 +0.5 844,726 - ABID97_RS04110 0.83 +1.1 844,726 - ABID97_RS04110 0.83 +0.9 844,726 - ABID97_RS04110 0.83 +1.3 844,726 - ABID97_RS04110 0.83 +0.7 844,894 + +1.3 844,894 + +1.0 844,894 + +0.3 844,894 + +0.5 844,894 + +0.3 844,894 + +0.1 844,894 + +0.2 845,006 + +0.4 845,006 + +0.2 845,007 - +0.9 845,007 - +1.1 845,007 - +0.2 845,007 - +1.2 845,007 - -0.0 845,007 - +1.3 845,007 - +0.6 845,010 - -0.1 845,010 - +0.2
Or see this region's nucleotide sequence