Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02305

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02295 and ABID97_RS02300 are separated by 8 nucleotidesABID97_RS02300 and ABID97_RS02305 are separated by 2 nucleotidesABID97_RS02305 and ABID97_RS02310 are separated by 183 nucleotides ABID97_RS02295: ABID97_RS02295 - sporulation protein, at 462,992 to 463,198 _RS02295 ABID97_RS02300: ABID97_RS02300 - biotin--[acetyl-CoA-carboxylase] ligase, at 463,207 to 464,028 _RS02300 ABID97_RS02305: ABID97_RS02305 - SET domain-containing protein-lysine N-methyltransferase, at 464,031 to 464,651 _RS02305 ABID97_RS02310: ABID97_RS02310 - DNA topoisomerase III, at 464,835 to 467,777 _RS02310 Position (kb) 464 465Strain fitness (log2 ratio) -1 0 1 2 3at 463.150 kb on - strand, within ABID97_RS02295at 464.261 kb on + strand, within ABID97_RS02305at 464.261 kb on + strand, within ABID97_RS02305at 464.261 kb on + strand, within ABID97_RS02305at 464.261 kb on + strand, within ABID97_RS02305at 464.261 kb on + strand, within ABID97_RS02305at 464.261 kb on + strand, within ABID97_RS02305at 464.262 kb on - strand, within ABID97_RS02305at 464.262 kb on - strand, within ABID97_RS02305at 464.262 kb on - strand, within ABID97_RS02305at 464.262 kb on - strand, within ABID97_RS02305at 464.262 kb on - strand, within ABID97_RS02305at 464.263 kb on + strand, within ABID97_RS02305at 464.264 kb on - strand, within ABID97_RS02305at 464.264 kb on - strand, within ABID97_RS02305at 464.287 kb on + strand, within ABID97_RS02305at 464.287 kb on + strand, within ABID97_RS02305at 464.293 kb on + strand, within ABID97_RS02305at 464.293 kb on + strand, within ABID97_RS02305at 464.293 kb on + strand, within ABID97_RS02305at 464.293 kb on + strand, within ABID97_RS02305at 464.293 kb on + strand, within ABID97_RS02305at 464.294 kb on - strand, within ABID97_RS02305at 464.294 kb on - strand, within ABID97_RS02305at 464.294 kb on - strand, within ABID97_RS02305at 464.294 kb on - strand, within ABID97_RS02305at 464.294 kb on - strand, within ABID97_RS02305at 464.294 kb on - strand, within ABID97_RS02305at 464.336 kb on + strand, within ABID97_RS02305at 464.336 kb on + strand, within ABID97_RS02305at 464.336 kb on + strand, within ABID97_RS02305at 464.336 kb on + strand, within ABID97_RS02305at 464.336 kb on + strand, within ABID97_RS02305at 464.337 kb on - strand, within ABID97_RS02305at 464.337 kb on - strand, within ABID97_RS02305at 464.337 kb on - strand, within ABID97_RS02305at 464.337 kb on - strand, within ABID97_RS02305at 464.337 kb on - strand, within ABID97_RS02305at 464.337 kb on - strand, within ABID97_RS02305at 464.338 kb on + strand, within ABID97_RS02305at 464.338 kb on + strand, within ABID97_RS02305at 464.338 kb on + strand, within ABID97_RS02305at 464.338 kb on + strand, within ABID97_RS02305at 464.339 kb on - strand, within ABID97_RS02305at 464.339 kb on - strand, within ABID97_RS02305at 464.339 kb on - strand, within ABID97_RS02305at 464.339 kb on - strand, within ABID97_RS02305at 464.455 kb on + strand, within ABID97_RS02305at 464.455 kb on + strand, within ABID97_RS02305at 464.455 kb on + strand, within ABID97_RS02305at 464.455 kb on + strand, within ABID97_RS02305at 464.455 kb on + strand, within ABID97_RS02305at 464.455 kb on + strand, within ABID97_RS02305at 464.456 kb on - strand, within ABID97_RS02305at 464.456 kb on - strand, within ABID97_RS02305at 464.456 kb on - strand, within ABID97_RS02305at 464.456 kb on - strand, within ABID97_RS02305at 464.533 kb on + strand, within ABID97_RS02305at 464.533 kb on + strand, within ABID97_RS02305at 464.533 kb on + strand, within ABID97_RS02305at 464.534 kb on - strand, within ABID97_RS02305at 464.534 kb on - strand, within ABID97_RS02305at 464.534 kb on - strand, within ABID97_RS02305at 464.534 kb on - strand, within ABID97_RS02305at 464.665 kb on + strandat 464.666 kb on - strandat 464.666 kb on - strandat 464.666 kb on - strandat 464.666 kb on - strandat 464.666 kb on - strandat 464.674 kb on + strandat 464.674 kb on + strandat 464.675 kb on - strandat 464.675 kb on - strandat 464.675 kb on - strandat 464.675 kb on - strandat 464.675 kb on - strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.725 kb on + strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.726 kb on - strandat 464.824 kb on + strandat 464.824 kb on + strandat 464.824 kb on + strandat 464.824 kb on + strandat 464.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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463,150 - ABID97_RS02295 0.76 +0.5
464,261 + ABID97_RS02305 0.37 +1.0
464,261 + ABID97_RS02305 0.37 +1.6
464,261 + ABID97_RS02305 0.37 +0.9
464,261 + ABID97_RS02305 0.37 +1.1
464,261 + ABID97_RS02305 0.37 +1.8
464,261 + ABID97_RS02305 0.37 +1.9
464,262 - ABID97_RS02305 0.37 +0.4
464,262 - ABID97_RS02305 0.37 +0.6
464,262 - ABID97_RS02305 0.37 +0.8
464,262 - ABID97_RS02305 0.37 +1.2
464,262 - ABID97_RS02305 0.37 +1.2
464,263 + ABID97_RS02305 0.37 +1.1
464,264 - ABID97_RS02305 0.38 +0.1
464,264 - ABID97_RS02305 0.38 +1.2
464,287 + ABID97_RS02305 0.41 +1.4
464,287 + ABID97_RS02305 0.41 +0.2
464,293 + ABID97_RS02305 0.42 +1.1
464,293 + ABID97_RS02305 0.42 +1.7
464,293 + ABID97_RS02305 0.42 +1.1
464,293 + ABID97_RS02305 0.42 +1.0
464,293 + ABID97_RS02305 0.42 +1.1
464,294 - ABID97_RS02305 0.42 +0.9
464,294 - ABID97_RS02305 0.42 +2.9
464,294 - ABID97_RS02305 0.42 +1.3
464,294 - ABID97_RS02305 0.42 +1.4
464,294 - ABID97_RS02305 0.42 +1.2
464,294 - ABID97_RS02305 0.42 -0.2
464,336 + ABID97_RS02305 0.49 +0.9
464,336 + ABID97_RS02305 0.49 +1.6
464,336 + ABID97_RS02305 0.49 +1.7
464,336 + ABID97_RS02305 0.49 +2.0
464,336 + ABID97_RS02305 0.49 +1.5
464,337 - ABID97_RS02305 0.49 +1.1
464,337 - ABID97_RS02305 0.49 +0.6
464,337 - ABID97_RS02305 0.49 +1.7
464,337 - ABID97_RS02305 0.49 +2.4
464,337 - ABID97_RS02305 0.49 +1.2
464,337 - ABID97_RS02305 0.49 +0.8
464,338 + ABID97_RS02305 0.49 +1.6
464,338 + ABID97_RS02305 0.49 +1.6
464,338 + ABID97_RS02305 0.49 +2.4
464,338 + ABID97_RS02305 0.49 +2.0
464,339 - ABID97_RS02305 0.50 +0.8
464,339 - ABID97_RS02305 0.50 +1.0
464,339 - ABID97_RS02305 0.50 +1.3
464,339 - ABID97_RS02305 0.50 +0.4
464,455 + ABID97_RS02305 0.68 +2.0
464,455 + ABID97_RS02305 0.68 +1.0
464,455 + ABID97_RS02305 0.68 -0.8
464,455 + ABID97_RS02305 0.68 +0.8
464,455 + ABID97_RS02305 0.68 +1.1
464,455 + ABID97_RS02305 0.68 +0.9
464,456 - ABID97_RS02305 0.68 -0.3
464,456 - ABID97_RS02305 0.68 +1.9
464,456 - ABID97_RS02305 0.68 +1.0
464,456 - ABID97_RS02305 0.68 +1.1
464,533 + ABID97_RS02305 0.81 +0.9
464,533 + ABID97_RS02305 0.81 +0.6
464,533 + ABID97_RS02305 0.81 +0.5
464,534 - ABID97_RS02305 0.81 +0.9
464,534 - ABID97_RS02305 0.81 +1.2
464,534 - ABID97_RS02305 0.81 +0.8
464,534 - ABID97_RS02305 0.81 +1.0
464,665 + +1.0
464,666 - -0.0
464,666 - -0.4
464,666 - -0.8
464,666 - -0.1
464,666 - -0.0
464,674 + +1.3
464,674 + +1.5
464,675 - +2.4
464,675 - +0.6
464,675 - -0.5
464,675 - +0.8
464,675 - +0.6
464,725 + -0.1
464,725 + +0.7
464,725 + -0.2
464,725 + +0.1
464,725 + -0.4
464,725 + +1.0
464,725 + -0.1
464,725 + -0.1
464,725 + +0.4
464,725 + -0.3
464,725 + +0.1
464,725 + -0.4
464,725 + -1.0
464,725 + -0.3
464,725 + +0.3
464,725 + +0.2
464,726 - +0.4
464,726 - +0.0
464,726 - -0.5
464,726 - +0.6
464,726 - +0.1
464,726 - +0.1
464,726 - -0.7
464,726 - -0.7
464,726 - -0.7
464,726 - -0.2
464,726 - +0.5
464,726 - -0.6
464,726 - -0.8
464,726 - -0.1
464,726 - -0.4
464,726 - +0.1
464,726 - -0.1
464,726 - -0.0
464,726 - -0.0
464,824 + +0.3
464,824 + -0.1
464,824 + +0.2
464,824 + +0.0
464,825 - -0.3

Or see this region's nucleotide sequence