Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02195

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02185 and ABID97_RS02190 overlap by 4 nucleotidesABID97_RS02190 and ABID97_RS02195 are separated by 7 nucleotidesABID97_RS02195 and ABID97_RS02200 are separated by 11 nucleotides ABID97_RS02185: ABID97_RS02185 - DapH/DapD/GlmU-related protein, at 440,690 to 441,271 _RS02185 ABID97_RS02190: ABID97_RS02190 - Gfo/Idh/MocA family oxidoreductase, at 441,268 to 442,221 _RS02190 ABID97_RS02195: ABID97_RS02195 - nucleotide sugar dehydrogenase, at 442,229 to 443,515 _RS02195 ABID97_RS02200: ABID97_RS02200 - nucleoside-diphosphate sugar epimerase/dehydratase, at 443,527 to 445,434 _RS02200 Position (kb) 442 443 444Strain fitness (log2 ratio) -2 -1 0 1 2 3at 441.407 kb on + strand, within ABID97_RS02190at 441.408 kb on - strand, within ABID97_RS02190at 441.408 kb on - strand, within ABID97_RS02190at 441.408 kb on - strand, within ABID97_RS02190at 441.479 kb on + strand, within ABID97_RS02190at 441.479 kb on + strand, within ABID97_RS02190at 441.480 kb on - strand, within ABID97_RS02190at 441.560 kb on + strand, within ABID97_RS02190at 441.561 kb on - strand, within ABID97_RS02190at 441.596 kb on + strand, within ABID97_RS02190at 441.596 kb on + strand, within ABID97_RS02190at 441.596 kb on + strand, within ABID97_RS02190at 441.597 kb on - strand, within ABID97_RS02190at 441.597 kb on - strand, within ABID97_RS02190at 441.740 kb on + strand, within ABID97_RS02190at 441.740 kb on + strand, within ABID97_RS02190at 441.740 kb on + strand, within ABID97_RS02190at 441.741 kb on - strand, within ABID97_RS02190at 441.741 kb on - strand, within ABID97_RS02190at 441.741 kb on - strand, within ABID97_RS02190at 441.995 kb on + strand, within ABID97_RS02190at 441.995 kb on + strand, within ABID97_RS02190at 441.996 kb on - strand, within ABID97_RS02190at 441.996 kb on - strand, within ABID97_RS02190at 442.008 kb on + strand, within ABID97_RS02190at 442.008 kb on + strand, within ABID97_RS02190at 442.009 kb on - strand, within ABID97_RS02190at 442.043 kb on + strand, within ABID97_RS02190at 442.043 kb on + strand, within ABID97_RS02190at 442.043 kb on + strand, within ABID97_RS02190at 442.044 kb on - strand, within ABID97_RS02190at 442.044 kb on - strand, within ABID97_RS02190at 442.044 kb on - strand, within ABID97_RS02190at 442.121 kb on + strand, within ABID97_RS02190at 442.121 kb on + strand, within ABID97_RS02190at 442.122 kb on - strand, within ABID97_RS02190at 442.182 kb on - strandat 442.278 kb on + strandat 442.324 kb on - strandat 442.363 kb on + strand, within ABID97_RS02195at 442.364 kb on - strand, within ABID97_RS02195at 442.392 kb on - strand, within ABID97_RS02195at 442.432 kb on - strand, within ABID97_RS02195at 442.592 kb on + strand, within ABID97_RS02195at 442.592 kb on + strand, within ABID97_RS02195at 442.592 kb on + strand, within ABID97_RS02195at 442.593 kb on - strand, within ABID97_RS02195at 442.627 kb on + strand, within ABID97_RS02195at 442.627 kb on + strand, within ABID97_RS02195at 442.627 kb on + strand, within ABID97_RS02195at 442.628 kb on - strand, within ABID97_RS02195at 442.628 kb on - strand, within ABID97_RS02195at 442.628 kb on - strand, within ABID97_RS02195at 442.642 kb on - strand, within ABID97_RS02195at 442.642 kb on - strand, within ABID97_RS02195at 442.642 kb on - strand, within ABID97_RS02195at 442.695 kb on + strand, within ABID97_RS02195at 442.695 kb on + strand, within ABID97_RS02195at 442.696 kb on - strand, within ABID97_RS02195at 442.696 kb on - strand, within ABID97_RS02195at 442.696 kb on - strand, within ABID97_RS02195at 442.696 kb on - strand, within ABID97_RS02195at 442.696 kb on - strand, within ABID97_RS02195at 442.716 kb on + strand, within ABID97_RS02195at 442.716 kb on + strand, within ABID97_RS02195at 442.716 kb on + strand, within ABID97_RS02195at 442.716 kb on + strand, within ABID97_RS02195at 442.717 kb on - strandat 442.725 kb on + strand, within ABID97_RS02195at 442.725 kb on + strand, within ABID97_RS02195at 442.725 kb on + strand, within ABID97_RS02195at 442.725 kb on + strand, within ABID97_RS02195at 442.725 kb on + strand, within ABID97_RS02195at 442.725 kb on + strand, within ABID97_RS02195at 442.725 kb on + strand, within ABID97_RS02195at 442.726 kb on - strand, within ABID97_RS02195at 442.726 kb on - strand, within ABID97_RS02195at 442.726 kb on - strand, within ABID97_RS02195at 442.726 kb on - strand, within ABID97_RS02195at 442.726 kb on - strand, within ABID97_RS02195at 442.728 kb on + strand, within ABID97_RS02195at 442.729 kb on - strand, within ABID97_RS02195at 442.833 kb on - strand, within ABID97_RS02195at 442.864 kb on + strand, within ABID97_RS02195at 442.892 kb on - strand, within ABID97_RS02195at 442.930 kb on + strand, within ABID97_RS02195at 442.930 kb on + strand, within ABID97_RS02195at 442.941 kb on + strand, within ABID97_RS02195at 442.941 kb on + strand, within ABID97_RS02195at 442.942 kb on - strand, within ABID97_RS02195at 442.942 kb on - strand, within ABID97_RS02195at 442.942 kb on - strand, within ABID97_RS02195at 443.039 kb on - strand, within ABID97_RS02195at 443.074 kb on + strand, within ABID97_RS02195at 443.075 kb on - strand, within ABID97_RS02195at 443.177 kb on + strand, within ABID97_RS02195at 443.178 kb on - strand, within ABID97_RS02195at 443.178 kb on - strandat 443.184 kb on - strand, within ABID97_RS02195at 443.184 kb on - strand, within ABID97_RS02195at 443.185 kb on + strand, within ABID97_RS02195at 443.185 kb on + strand, within ABID97_RS02195at 443.186 kb on - strand, within ABID97_RS02195at 443.186 kb on - strand, within ABID97_RS02195at 443.273 kb on - strand, within ABID97_RS02195at 443.277 kb on - strand, within ABID97_RS02195at 443.277 kb on - strand, within ABID97_RS02195at 443.281 kb on + strand, within ABID97_RS02195at 443.396 kb on + strandat 443.396 kb on + strandat 443.396 kb on + strandat 443.436 kb on - strandat 443.481 kb on + strandat 443.482 kb on - strandat 443.534 kb on - strandat 443.561 kb on - strandat 443.575 kb on - strandat 443.618 kb on - strandat 443.808 kb on + strand, within ABID97_RS02200at 443.808 kb on + strand, within ABID97_RS02200at 443.809 kb on - strand, within ABID97_RS02200at 443.869 kb on - strand, within ABID97_RS02200at 443.946 kb on + strand, within ABID97_RS02200at 443.958 kb on + strand, within ABID97_RS02200at 443.959 kb on - strand, within ABID97_RS02200at 444.043 kb on + strand, within ABID97_RS02200at 444.044 kb on - strand, within ABID97_RS02200at 444.044 kb on - strand, within ABID97_RS02200at 444.044 kb on - strand, within ABID97_RS02200at 444.044 kb on - strand, within ABID97_RS02200at 444.197 kb on - strand, within ABID97_RS02200at 444.244 kb on - strand, within ABID97_RS02200at 444.333 kb on - strand, within ABID97_RS02200at 444.383 kb on + strand, within ABID97_RS02200at 444.423 kb on + strand, within ABID97_RS02200at 444.424 kb on - strand, within ABID97_RS02200at 444.431 kb on - strand, within ABID97_RS02200at 444.431 kb on - strand, within ABID97_RS02200at 444.442 kb on - strand, within ABID97_RS02200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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441,407 + ABID97_RS02190 0.15 +1.0
441,408 - ABID97_RS02190 0.15 +0.3
441,408 - ABID97_RS02190 0.15 +0.4
441,408 - ABID97_RS02190 0.15 -0.7
441,479 + ABID97_RS02190 0.22 +0.3
441,479 + ABID97_RS02190 0.22 +1.1
441,480 - ABID97_RS02190 0.22 +0.4
441,560 + ABID97_RS02190 0.31 +0.6
441,561 - ABID97_RS02190 0.31 +0.1
441,596 + ABID97_RS02190 0.34 +0.3
441,596 + ABID97_RS02190 0.34 +0.3
441,596 + ABID97_RS02190 0.34 +0.7
441,597 - ABID97_RS02190 0.34 +0.6
441,597 - ABID97_RS02190 0.34 +0.4
441,740 + ABID97_RS02190 0.49 +0.4
441,740 + ABID97_RS02190 0.49 +0.6
441,740 + ABID97_RS02190 0.49 +0.2
441,741 - ABID97_RS02190 0.50 +1.7
441,741 - ABID97_RS02190 0.50 +0.2
441,741 - ABID97_RS02190 0.50 +0.2
441,995 + ABID97_RS02190 0.76 -0.1
441,995 + ABID97_RS02190 0.76 +0.5
441,996 - ABID97_RS02190 0.76 +0.3
441,996 - ABID97_RS02190 0.76 +1.4
442,008 + ABID97_RS02190 0.78 -0.1
442,008 + ABID97_RS02190 0.78 +0.1
442,009 - ABID97_RS02190 0.78 +0.0
442,043 + ABID97_RS02190 0.81 +0.1
442,043 + ABID97_RS02190 0.81 +1.2
442,043 + ABID97_RS02190 0.81 +0.7
442,044 - ABID97_RS02190 0.81 +0.4
442,044 - ABID97_RS02190 0.81 +1.0
442,044 - ABID97_RS02190 0.81 +0.2
442,121 + ABID97_RS02190 0.89 +1.6
442,121 + ABID97_RS02190 0.89 +0.1
442,122 - ABID97_RS02190 0.90 +0.1
442,182 - +0.1
442,278 + +1.0
442,324 - +0.0
442,363 + ABID97_RS02195 0.10 +0.6
442,364 - ABID97_RS02195 0.10 +0.3
442,392 - ABID97_RS02195 0.13 +1.1
442,432 - ABID97_RS02195 0.16 -0.2
442,592 + ABID97_RS02195 0.28 +0.5
442,592 + ABID97_RS02195 0.28 +0.8
442,592 + ABID97_RS02195 0.28 +1.1
442,593 - ABID97_RS02195 0.28 +0.7
442,627 + ABID97_RS02195 0.31 +2.2
442,627 + ABID97_RS02195 0.31 +3.0
442,627 + ABID97_RS02195 0.31 +0.8
442,628 - ABID97_RS02195 0.31 +0.8
442,628 - ABID97_RS02195 0.31 +1.8
442,628 - ABID97_RS02195 0.31 +0.0
442,642 - ABID97_RS02195 0.32 +0.3
442,642 - ABID97_RS02195 0.32 +0.9
442,642 - ABID97_RS02195 0.32 +0.1
442,695 + ABID97_RS02195 0.36 +0.3
442,695 + ABID97_RS02195 0.36 +0.6
442,696 - ABID97_RS02195 0.36 +0.8
442,696 - ABID97_RS02195 0.36 +0.6
442,696 - ABID97_RS02195 0.36 -1.5
442,696 - ABID97_RS02195 0.36 +0.7
442,696 - ABID97_RS02195 0.36 +0.2
442,716 + ABID97_RS02195 0.38 -0.4
442,716 + ABID97_RS02195 0.38 +0.6
442,716 + ABID97_RS02195 0.38 +0.8
442,716 + ABID97_RS02195 0.38 +3.7
442,717 - +0.8
442,725 + ABID97_RS02195 0.39 +0.7
442,725 + ABID97_RS02195 0.39 +1.1
442,725 + ABID97_RS02195 0.39 +0.9
442,725 + ABID97_RS02195 0.39 +0.6
442,725 + ABID97_RS02195 0.39 +1.1
442,725 + ABID97_RS02195 0.39 +0.6
442,725 + ABID97_RS02195 0.39 +0.1
442,726 - ABID97_RS02195 0.39 +0.8
442,726 - ABID97_RS02195 0.39 +1.0
442,726 - ABID97_RS02195 0.39 +1.2
442,726 - ABID97_RS02195 0.39 +0.9
442,726 - ABID97_RS02195 0.39 +1.1
442,728 + ABID97_RS02195 0.39 +0.9
442,729 - ABID97_RS02195 0.39 +0.5
442,833 - ABID97_RS02195 0.47 +0.8
442,864 + ABID97_RS02195 0.49 +0.4
442,892 - ABID97_RS02195 0.52 -0.2
442,930 + ABID97_RS02195 0.54 +0.6
442,930 + ABID97_RS02195 0.54 +0.7
442,941 + ABID97_RS02195 0.55 +0.1
442,941 + ABID97_RS02195 0.55 +0.9
442,942 - ABID97_RS02195 0.55 +1.5
442,942 - ABID97_RS02195 0.55 +0.8
442,942 - ABID97_RS02195 0.55 +0.6
443,039 - ABID97_RS02195 0.63 +0.4
443,074 + ABID97_RS02195 0.66 +0.1
443,075 - ABID97_RS02195 0.66 +0.8
443,177 + ABID97_RS02195 0.74 +0.9
443,178 - ABID97_RS02195 0.74 +0.7
443,178 - +1.4
443,184 - ABID97_RS02195 0.74 +0.3
443,184 - ABID97_RS02195 0.74 +1.9
443,185 + ABID97_RS02195 0.74 +0.9
443,185 + ABID97_RS02195 0.74 +0.9
443,186 - ABID97_RS02195 0.74 +0.5
443,186 - ABID97_RS02195 0.74 +0.8
443,273 - ABID97_RS02195 0.81 +0.7
443,277 - ABID97_RS02195 0.81 +0.0
443,277 - ABID97_RS02195 0.81 +1.5
443,281 + ABID97_RS02195 0.82 +0.3
443,396 + +1.1
443,396 + +1.0
443,396 + -0.2
443,436 - +0.8
443,481 + +1.5
443,482 - +0.5
443,534 - -0.0
443,561 - -0.4
443,575 - -2.1
443,618 - -0.4
443,808 + ABID97_RS02200 0.15 -2.2
443,808 + ABID97_RS02200 0.15 -1.4
443,809 - ABID97_RS02200 0.15 -0.3
443,869 - ABID97_RS02200 0.18 -0.5
443,946 + ABID97_RS02200 0.22 -2.2
443,958 + ABID97_RS02200 0.23 -1.2
443,959 - ABID97_RS02200 0.23 -0.6
444,043 + ABID97_RS02200 0.27 -1.4
444,044 - ABID97_RS02200 0.27 +0.4
444,044 - ABID97_RS02200 0.27 -0.6
444,044 - ABID97_RS02200 0.27 -1.2
444,044 - ABID97_RS02200 0.27 -0.3
444,197 - ABID97_RS02200 0.35 -1.1
444,244 - ABID97_RS02200 0.38 -2.7
444,333 - ABID97_RS02200 0.42 -0.6
444,383 + ABID97_RS02200 0.45 -2.4
444,423 + ABID97_RS02200 0.47 -1.5
444,424 - ABID97_RS02200 0.47 -2.5
444,431 - ABID97_RS02200 0.47 -0.3
444,431 - ABID97_RS02200 0.47 -1.3
444,442 - ABID97_RS02200 0.48 -0.6

Or see this region's nucleotide sequence