Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02165

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02160 and ABID97_RS02165 are separated by 96 nucleotidesABID97_RS02165 and ABID97_RS02170 are separated by 14 nucleotides ABID97_RS02160: ABID97_RS02160 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 435,240 to 436,331 _RS02160 ABID97_RS02165: ABID97_RS02165 - glycosyltransferase, at 436,428 to 437,525 _RS02165 ABID97_RS02170: ABID97_RS02170 - hypothetical protein, at 437,540 to 438,730 _RS02170 Position (kb) 436 437 438Strain fitness (log2 ratio) -1 0 1 2 3at 435.828 kb on + strand, within ABID97_RS02160at 435.828 kb on + strand, within ABID97_RS02160at 435.828 kb on + strand, within ABID97_RS02160at 435.864 kb on - strand, within ABID97_RS02160at 435.864 kb on - strand, within ABID97_RS02160at 435.864 kb on - strand, within ABID97_RS02160at 435.868 kb on - strand, within ABID97_RS02160at 435.868 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.051 kb on + strand, within ABID97_RS02160at 436.173 kb on - strand, within ABID97_RS02160at 436.292 kb on + strandat 436.292 kb on + strandat 436.333 kb on + strandat 436.333 kb on + strandat 436.380 kb on + strandat 436.460 kb on - strandat 436.612 kb on - strand, within ABID97_RS02165at 436.638 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.657 kb on - strand, within ABID97_RS02165at 436.657 kb on - strand, within ABID97_RS02165at 436.747 kb on + strand, within ABID97_RS02165at 436.747 kb on + strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.771 kb on - strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.253 kb on + strand, within ABID97_RS02165at 437.298 kb on + strand, within ABID97_RS02165at 437.299 kb on - strand, within ABID97_RS02165at 437.511 kb on + strandat 437.512 kb on - strandat 437.613 kb on - strandat 437.681 kb on + strand, within ABID97_RS02170at 437.693 kb on + strand, within ABID97_RS02170at 437.694 kb on - strand, within ABID97_RS02170at 437.805 kb on + strand, within ABID97_RS02170at 437.806 kb on - strand, within ABID97_RS02170at 437.806 kb on - strand, within ABID97_RS02170at 437.917 kb on + strand, within ABID97_RS02170at 437.917 kb on + strand, within ABID97_RS02170at 437.918 kb on - strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.962 kb on - strand, within ABID97_RS02170at 437.962 kb on - strand, within ABID97_RS02170at 438.044 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.287 kb on + strand, within ABID97_RS02170at 438.287 kb on + strand, within ABID97_RS02170at 438.317 kb on + strand, within ABID97_RS02170at 438.318 kb on - strand, within ABID97_RS02170at 438.323 kb on - strand, within ABID97_RS02170at 438.407 kb on + strand, within ABID97_RS02170at 438.450 kb on + strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.476 kb on + strand, within ABID97_RS02170at 438.477 kb on - strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.485 kb on - strand, within ABID97_RS02170at 438.488 kb on + strand, within ABID97_RS02170at 438.488 kb on + strand, within ABID97_RS02170

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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435,828 + ABID97_RS02160 0.54 -0.4
435,828 + ABID97_RS02160 0.54 +0.7
435,828 + ABID97_RS02160 0.54 +1.0
435,864 - ABID97_RS02160 0.57 +0.5
435,864 - ABID97_RS02160 0.57 +0.5
435,864 - ABID97_RS02160 0.57 +0.7
435,868 - ABID97_RS02160 0.58 +0.1
435,868 - ABID97_RS02160 0.58 +0.4
436,041 - ABID97_RS02160 0.73 +0.3
436,041 - ABID97_RS02160 0.73 +0.1
436,041 - ABID97_RS02160 0.73 +0.2
436,041 - ABID97_RS02160 0.73 +0.7
436,051 + ABID97_RS02160 0.74 +0.8
436,173 - ABID97_RS02160 0.85 -0.1
436,292 + +2.6
436,292 + +1.1
436,333 + -0.4
436,333 + +0.6
436,380 + +0.3
436,460 - +0.6
436,612 - ABID97_RS02165 0.17 +1.9
436,638 + ABID97_RS02165 0.19 +0.9
436,656 + ABID97_RS02165 0.21 +1.1
436,656 + ABID97_RS02165 0.21 +0.7
436,656 + ABID97_RS02165 0.21 +0.9
436,657 - ABID97_RS02165 0.21 +0.5
436,657 - ABID97_RS02165 0.21 +1.3
436,747 + ABID97_RS02165 0.29 +0.6
436,747 + ABID97_RS02165 0.29 +1.2
436,748 - ABID97_RS02165 0.29 +0.3
436,748 - ABID97_RS02165 0.29 +0.7
436,748 - ABID97_RS02165 0.29 +2.4
436,748 - ABID97_RS02165 0.29 +1.1
436,771 - ABID97_RS02165 0.31 +0.8
436,966 + ABID97_RS02165 0.49 +0.7
436,966 + ABID97_RS02165 0.49 +1.4
436,966 + ABID97_RS02165 0.49 +1.0
436,967 - ABID97_RS02165 0.49 +0.4
436,967 - ABID97_RS02165 0.49 +1.0
436,967 - ABID97_RS02165 0.49 +0.5
437,206 + ABID97_RS02165 0.71 +1.0
437,206 + ABID97_RS02165 0.71 +0.7
437,206 + ABID97_RS02165 0.71 +1.0
437,206 + ABID97_RS02165 0.71 +0.8
437,207 - ABID97_RS02165 0.71 -0.1
437,207 - ABID97_RS02165 0.71 +0.8
437,207 - ABID97_RS02165 0.71 +0.6
437,253 + ABID97_RS02165 0.75 +0.9
437,298 + ABID97_RS02165 0.79 +0.5
437,299 - ABID97_RS02165 0.79 +1.0
437,511 + +0.5
437,512 - +0.7
437,613 - +2.4
437,681 + ABID97_RS02170 0.12 +1.6
437,693 + ABID97_RS02170 0.13 +1.2
437,694 - ABID97_RS02170 0.13 +1.0
437,805 + ABID97_RS02170 0.22 +0.6
437,806 - ABID97_RS02170 0.22 +1.6
437,806 - ABID97_RS02170 0.22 +1.1
437,917 + ABID97_RS02170 0.32 +1.7
437,917 + ABID97_RS02170 0.32 +2.5
437,918 - ABID97_RS02170 0.32 +1.4
437,961 + ABID97_RS02170 0.35 +1.1
437,961 + ABID97_RS02170 0.35 +0.9
437,961 + ABID97_RS02170 0.35 +1.4
437,961 + ABID97_RS02170 0.35 +1.2
437,962 - ABID97_RS02170 0.35 +1.4
437,962 - ABID97_RS02170 0.35 +2.1
438,044 + ABID97_RS02170 0.42 +1.3
438,233 + ABID97_RS02170 0.58 +3.6
438,233 + ABID97_RS02170 0.58 +1.6
438,233 + ABID97_RS02170 0.58 +1.1
438,233 + ABID97_RS02170 0.58 +1.5
438,234 - ABID97_RS02170 0.58 +1.3
438,234 - ABID97_RS02170 0.58 +0.5
438,234 - ABID97_RS02170 0.58 +1.5
438,287 + ABID97_RS02170 0.63 +1.9
438,287 + ABID97_RS02170 0.63 +1.4
438,317 + ABID97_RS02170 0.65 +1.4
438,318 - ABID97_RS02170 0.65 +1.3
438,323 - ABID97_RS02170 0.66 +0.8
438,407 + ABID97_RS02170 0.73 +2.6
438,450 + ABID97_RS02170 0.76 +1.5
438,451 - ABID97_RS02170 0.76 +1.2
438,451 - ABID97_RS02170 0.76 +1.1
438,451 - ABID97_RS02170 0.76 +1.0
438,476 + ABID97_RS02170 0.79 +1.9
438,477 - ABID97_RS02170 0.79 -0.6
438,484 + ABID97_RS02170 0.79 +1.4
438,484 + ABID97_RS02170 0.79 +1.3
438,484 + ABID97_RS02170 0.79 +1.5
438,485 - ABID97_RS02170 0.79 +1.3
438,488 + ABID97_RS02170 0.80 +1.7
438,488 + ABID97_RS02170 0.80 +1.5

Or see this region's nucleotide sequence