Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02005 and ABID97_RS02010 overlap by 46 nucleotides ABID97_RS02010 and ABID97_RS02015 are separated by 25 nucleotides ABID97_RS02015 and ABID97_RS02020 overlap by 8 nucleotides
ABID97_RS02005: ABID97_RS02005 - YhdP family protein, at 399,140 to 403,003
_RS02005
ABID97_RS02010: ABID97_RS02010 - hypothetical protein, at 402,958 to 403,323
_RS02010
ABID97_RS02015: ABID97_RS02015 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 403,349 to 406,141
_RS02015
ABID97_RS02020: ABID97_RS02020 - septal ring lytic transglycosylase RlpA family protein, at 406,134 to 407,168
_RS02020
Position (kb) 403
404
405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 402.541 kb on - strand, within ABID97_RS02005 at 402.541 kb on - strand, within ABID97_RS02005 at 402.541 kb on - strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.582 kb on + strand, within ABID97_RS02005 at 402.583 kb on - strand, within ABID97_RS02005 at 402.940 kb on + strand at 402.942 kb on + strand at 402.942 kb on + strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 403.092 kb on + strand, within ABID97_RS02010 at 403.093 kb on - strand, within ABID97_RS02010 at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.482 kb on - strand at 403.482 kb on - strand at 403.544 kb on + strand at 403.850 kb on + strand, within ABID97_RS02015 at 403.850 kb on + strand, within ABID97_RS02015 at 403.850 kb on + strand, within ABID97_RS02015 at 403.850 kb on + strand, within ABID97_RS02015 at 403.851 kb on - strand, within ABID97_RS02015 at 403.857 kb on - strand, within ABID97_RS02015 at 403.946 kb on + strand, within ABID97_RS02015 at 403.946 kb on + strand, within ABID97_RS02015 at 403.946 kb on + strand, within ABID97_RS02015 at 403.947 kb on - strand, within ABID97_RS02015 at 403.947 kb on - strand, within ABID97_RS02015 at 403.947 kb on - strand, within ABID97_RS02015 at 404.061 kb on - strand, within ABID97_RS02015 at 404.960 kb on + strand, within ABID97_RS02015 at 404.960 kb on + strand, within ABID97_RS02015 at 404.961 kb on - strand, within ABID97_RS02015 at 404.961 kb on - strand, within ABID97_RS02015 at 404.961 kb on - strand, within ABID97_RS02015 at 404.961 kb on - strand, within ABID97_RS02015 at 405.042 kb on - strand, within ABID97_RS02015 at 405.042 kb on - strand, within ABID97_RS02015 at 405.042 kb on - strand, within ABID97_RS02015 at 405.479 kb on + strand, within ABID97_RS02015 at 405.479 kb on + strand, within ABID97_RS02015 at 405.479 kb on + strand, within ABID97_RS02015 at 405.488 kb on + strand, within ABID97_RS02015 at 405.488 kb on + strand, within ABID97_RS02015 at 405.488 kb on + strand, within ABID97_RS02015 at 405.489 kb on - strand, within ABID97_RS02015 at 406.131 kb on + strand at 406.131 kb on + strand at 406.132 kb on - strand at 406.353 kb on + strand, within ABID97_RS02020 at 406.353 kb on + strand, within ABID97_RS02020 at 406.354 kb on - strand, within ABID97_RS02020 at 406.354 kb on - strand, within ABID97_RS02020 at 406.374 kb on + strand, within ABID97_RS02020 at 406.375 kb on - strand, within ABID97_RS02020 at 406.428 kb on + strand, within ABID97_RS02020 at 406.473 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.482 kb on + strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.483 kb on - strand, within ABID97_RS02020 at 406.524 kb on + strand, within ABID97_RS02020 at 406.524 kb on + strand, within ABID97_RS02020 at 406.524 kb on + strand, within ABID97_RS02020 at 406.524 kb on + strand, within ABID97_RS02020 at 406.525 kb on - strand, within ABID97_RS02020 at 406.525 kb on - strand, within ABID97_RS02020 at 406.525 kb on - strand, within ABID97_RS02020 at 406.620 kb on + strand, within ABID97_RS02020 at 406.620 kb on + strand, within ABID97_RS02020 at 406.734 kb on + strand, within ABID97_RS02020 at 406.735 kb on - strand, within ABID97_RS02020 at 406.735 kb on - strand, within ABID97_RS02020 at 406.735 kb on - strand, within ABID97_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 402,541 - ABID97_RS02005 0.88 -0.6 402,541 - ABID97_RS02005 0.88 -1.1 402,541 - ABID97_RS02005 0.88 -0.4 402,567 + ABID97_RS02005 0.89 -0.7 402,567 + ABID97_RS02005 0.89 -1.8 402,567 + ABID97_RS02005 0.89 +0.4 402,567 + ABID97_RS02005 0.89 -0.8 402,582 + ABID97_RS02005 0.89 -0.4 402,583 - ABID97_RS02005 0.89 -0.2 402,940 + +1.4 402,942 + -1.4 402,942 + -0.5 402,943 - -0.7 402,943 - -0.2 402,943 - -0.1 402,943 - -0.8 402,943 - -0.7 402,943 - +1.1 403,092 + ABID97_RS02010 0.37 -0.4 403,093 - ABID97_RS02010 0.37 -0.2 403,387 + -0.1 403,387 + -0.1 403,387 + -0.3 403,387 + -0.3 403,388 - +0.0 403,388 - +0.2 403,388 - -0.1 403,482 - +2.6 403,482 - +2.3 403,544 + +0.8 403,850 + ABID97_RS02015 0.18 +2.1 403,850 + ABID97_RS02015 0.18 -0.4 403,850 + ABID97_RS02015 0.18 +1.1 403,850 + ABID97_RS02015 0.18 -0.3 403,851 - ABID97_RS02015 0.18 +3.2 403,857 - ABID97_RS02015 0.18 +2.1 403,946 + ABID97_RS02015 0.21 +2.8 403,946 + ABID97_RS02015 0.21 -0.7 403,946 + ABID97_RS02015 0.21 +1.6 403,947 - ABID97_RS02015 0.21 +2.3 403,947 - ABID97_RS02015 0.21 +2.5 403,947 - ABID97_RS02015 0.21 +2.7 404,061 - ABID97_RS02015 0.25 +2.2 404,960 + ABID97_RS02015 0.58 +2.4 404,960 + ABID97_RS02015 0.58 +2.7 404,961 - ABID97_RS02015 0.58 +2.8 404,961 - ABID97_RS02015 0.58 +3.0 404,961 - ABID97_RS02015 0.58 +2.9 404,961 - ABID97_RS02015 0.58 +2.7 405,042 - ABID97_RS02015 0.61 +2.3 405,042 - ABID97_RS02015 0.61 +2.5 405,042 - ABID97_RS02015 0.61 +2.1 405,479 + ABID97_RS02015 0.76 +2.3 405,479 + ABID97_RS02015 0.76 +2.1 405,479 + ABID97_RS02015 0.76 +1.5 405,488 + ABID97_RS02015 0.77 +2.1 405,488 + ABID97_RS02015 0.77 +2.1 405,488 + ABID97_RS02015 0.77 +1.4 405,489 - ABID97_RS02015 0.77 +3.2 406,131 + +0.1 406,131 + +1.2 406,132 - -0.5 406,353 + ABID97_RS02020 0.21 -0.3 406,353 + ABID97_RS02020 0.21 +0.5 406,354 - ABID97_RS02020 0.21 -0.7 406,354 - ABID97_RS02020 0.21 +0.0 406,374 + ABID97_RS02020 0.23 +0.8 406,375 - ABID97_RS02020 0.23 -0.2 406,428 + ABID97_RS02020 0.28 -0.4 406,473 + ABID97_RS02020 0.33 -0.6 406,482 + ABID97_RS02020 0.34 +0.3 406,482 + ABID97_RS02020 0.34 -1.3 406,482 + ABID97_RS02020 0.34 -0.3 406,482 + ABID97_RS02020 0.34 +0.8 406,482 + ABID97_RS02020 0.34 +0.6 406,482 + ABID97_RS02020 0.34 -0.1 406,482 + ABID97_RS02020 0.34 -0.9 406,482 + ABID97_RS02020 0.34 -1.5 406,483 - ABID97_RS02020 0.34 +0.0 406,483 - ABID97_RS02020 0.34 -0.8 406,483 - ABID97_RS02020 0.34 +0.0 406,483 - ABID97_RS02020 0.34 +0.8 406,483 - ABID97_RS02020 0.34 +1.0 406,483 - ABID97_RS02020 0.34 -0.0 406,483 - ABID97_RS02020 0.34 -0.1 406,483 - ABID97_RS02020 0.34 +0.2 406,483 - ABID97_RS02020 0.34 +0.5 406,524 + ABID97_RS02020 0.38 -0.1 406,524 + ABID97_RS02020 0.38 +1.0 406,524 + ABID97_RS02020 0.38 +0.7 406,524 + ABID97_RS02020 0.38 +0.6 406,525 - ABID97_RS02020 0.38 +0.4 406,525 - ABID97_RS02020 0.38 -0.4 406,525 - ABID97_RS02020 0.38 +0.9 406,620 + ABID97_RS02020 0.47 +0.4 406,620 + ABID97_RS02020 0.47 -0.4 406,734 + ABID97_RS02020 0.58 +0.2 406,735 - ABID97_RS02020 0.58 -0.0 406,735 - ABID97_RS02020 0.58 -0.1 406,735 - ABID97_RS02020 0.58 +0.4
Or see this region's nucleotide sequence