Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01605 and ABID97_RS01610 are separated by 74 nucleotides ABID97_RS01610 and ABID97_RS01615 are separated by 90 nucleotides ABID97_RS01615 and ABID97_RS01620 are separated by 47 nucleotides ABID97_RS01620 and ABID97_RS01625 overlap by 4 nucleotides
ABID97_RS01605: ABID97_RS01605 - SDR family oxidoreductase, at 316,286 to 317,074
_RS01605
ABID97_RS01610: ABID97_RS01610 - DUF3597 domain-containing protein, at 317,149 to 317,535
_RS01610
ABID97_RS01615: ABID97_RS01615 - serine endopeptidase, at 317,626 to 318,735
_RS01615
ABID97_RS01620: ABID97_RS01620 - DUF2145 domain-containing protein, at 318,783 to 319,577
_RS01620
ABID97_RS01625: ABID97_RS01625 - hypothetical protein, at 319,574 to 320,035
_RS01625
Position (kb) 317
318
319 Strain fitness (log2 ratio) -1
0
1 at 316.791 kb on - strand, within ABID97_RS01605 at 316.791 kb on - strand, within ABID97_RS01605 at 316.791 kb on - strand, within ABID97_RS01605 at 317.258 kb on + strand, within ABID97_RS01610 at 317.259 kb on - strand, within ABID97_RS01610 at 317.259 kb on - strand, within ABID97_RS01610 at 317.558 kb on + strand at 317.559 kb on - strand at 317.559 kb on - strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.604 kb on - strand at 317.892 kb on - strand, within ABID97_RS01615 at 317.892 kb on - strand, within ABID97_RS01615 at 317.892 kb on - strand, within ABID97_RS01615 at 317.911 kb on + strand, within ABID97_RS01615 at 317.978 kb on + strand, within ABID97_RS01615 at 318.017 kb on + strand, within ABID97_RS01615 at 318.018 kb on - strand, within ABID97_RS01615 at 318.114 kb on - strand, within ABID97_RS01615 at 318.784 kb on + strand at 318.784 kb on + strand at 318.785 kb on - strand at 318.785 kb on - strand at 319.082 kb on - strand, within ABID97_RS01620 at 319.099 kb on + strand, within ABID97_RS01620 at 319.099 kb on + strand, within ABID97_RS01620 at 319.099 kb on + strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.114 kb on + strand, within ABID97_RS01620 at 319.261 kb on + strand, within ABID97_RS01620 at 319.333 kb on + strand, within ABID97_RS01620 at 319.334 kb on - strand, within ABID97_RS01620 at 319.334 kb on - strand, within ABID97_RS01620 at 319.366 kb on + strand, within ABID97_RS01620 at 319.366 kb on + strand, within ABID97_RS01620 at 319.366 kb on + strand, within ABID97_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 316,791 - ABID97_RS01605 0.64 -0.5 316,791 - ABID97_RS01605 0.64 +0.4 316,791 - ABID97_RS01605 0.64 -0.1 317,258 + ABID97_RS01610 0.28 +0.0 317,259 - ABID97_RS01610 0.28 +0.3 317,259 - ABID97_RS01610 0.28 -0.0 317,558 + -0.1 317,559 - -1.1 317,559 - -0.5 317,603 + -0.6 317,603 + +0.4 317,603 + -0.5 317,603 + +0.7 317,603 + -0.5 317,604 - -0.1 317,892 - ABID97_RS01615 0.24 -1.6 317,892 - ABID97_RS01615 0.24 -0.2 317,892 - ABID97_RS01615 0.24 +0.3 317,911 + ABID97_RS01615 0.26 +0.3 317,978 + ABID97_RS01615 0.32 -0.2 318,017 + ABID97_RS01615 0.35 -0.4 318,018 - ABID97_RS01615 0.35 -0.2 318,114 - ABID97_RS01615 0.44 -0.6 318,784 + +1.7 318,784 + -1.6 318,785 - -0.5 318,785 - -0.2 319,082 - ABID97_RS01620 0.38 -0.3 319,099 + ABID97_RS01620 0.40 +0.2 319,099 + ABID97_RS01620 0.40 -0.9 319,099 + ABID97_RS01620 0.40 -0.2 319,100 - ABID97_RS01620 0.40 -0.5 319,100 - ABID97_RS01620 0.40 +0.7 319,100 - ABID97_RS01620 0.40 -0.2 319,100 - ABID97_RS01620 0.40 +0.1 319,114 + ABID97_RS01620 0.42 -0.3 319,261 + ABID97_RS01620 0.60 -0.2 319,333 + ABID97_RS01620 0.69 -0.1 319,334 - ABID97_RS01620 0.69 -1.4 319,334 - ABID97_RS01620 0.69 +1.3 319,366 + ABID97_RS01620 0.73 -0.0 319,366 + ABID97_RS01620 0.73 -0.6 319,366 + ABID97_RS01620 0.73 -0.5
Or see this region's nucleotide sequence