Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00515

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00510 and ABID97_RS00515 overlap by 20 nucleotidesABID97_RS00515 and ABID97_RS00520 overlap by 4 nucleotidesABID97_RS00520 and ABID97_RS00525 are separated by 10 nucleotides ABID97_RS00510: ABID97_RS00510 - class I adenylate-forming enzyme family protein, at 110,639 to 112,171 _RS00510 ABID97_RS00515: ABID97_RS00515 - SLC13 family permease, at 112,152 to 113,282 _RS00515 ABID97_RS00520: ABID97_RS00520 - AraC family transcriptional regulator, at 113,279 to 114,031 _RS00520 ABID97_RS00525: ABID97_RS00525 - DMT family transporter, at 114,042 to 114,887 _RS00525 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2at 111.215 kb on + strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.261 kb on - strand, within ABID97_RS00510at 111.347 kb on + strand, within ABID97_RS00510at 111.347 kb on + strand, within ABID97_RS00510at 111.348 kb on - strand, within ABID97_RS00510at 111.404 kb on + strand, within ABID97_RS00510at 111.546 kb on - strand, within ABID97_RS00510at 111.896 kb on + strand, within ABID97_RS00510at 111.896 kb on + strand, within ABID97_RS00510at 111.897 kb on - strand, within ABID97_RS00510at 111.897 kb on - strand, within ABID97_RS00510at 112.614 kb on + strand, within ABID97_RS00515at 112.614 kb on + strand, within ABID97_RS00515at 112.614 kb on + strandat 112.614 kb on + strand, within ABID97_RS00515at 112.615 kb on - strandat 112.615 kb on - strand, within ABID97_RS00515at 112.615 kb on - strand, within ABID97_RS00515at 112.862 kb on - strand, within ABID97_RS00515at 112.884 kb on + strand, within ABID97_RS00515at 112.884 kb on + strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 113.315 kb on + strandat 113.576 kb on + strand, within ABID97_RS00520at 113.576 kb on + strand, within ABID97_RS00520at 113.576 kb on + strand, within ABID97_RS00520at 113.577 kb on - strand, within ABID97_RS00520at 113.577 kb on - strand, within ABID97_RS00520at 114.029 kb on + strandat 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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111,215 + ABID97_RS00510 0.38 +0.0
111,216 - ABID97_RS00510 0.38 -0.4
111,216 - ABID97_RS00510 0.38 -0.1
111,216 - ABID97_RS00510 0.38 -0.3
111,216 - ABID97_RS00510 0.38 -1.7
111,261 - ABID97_RS00510 0.41 +0.7
111,347 + ABID97_RS00510 0.46 -0.4
111,347 + ABID97_RS00510 0.46 +0.6
111,348 - ABID97_RS00510 0.46 +0.0
111,404 + ABID97_RS00510 0.50 -0.2
111,546 - ABID97_RS00510 0.59 -0.8
111,896 + ABID97_RS00510 0.82 +0.2
111,896 + ABID97_RS00510 0.82 -0.2
111,897 - ABID97_RS00510 0.82 -1.4
111,897 - ABID97_RS00510 0.82 -1.9
112,614 + ABID97_RS00515 0.41 +1.1
112,614 + ABID97_RS00515 0.41 -0.3
112,614 + +2.3
112,614 + ABID97_RS00515 0.41 -0.1
112,615 - -0.0
112,615 - ABID97_RS00515 0.41 +0.0
112,615 - ABID97_RS00515 0.41 -0.3
112,862 - ABID97_RS00515 0.63 +0.5
112,884 + ABID97_RS00515 0.65 -0.6
112,884 + ABID97_RS00515 0.65 +0.1
112,885 - ABID97_RS00515 0.65 +0.5
112,885 - ABID97_RS00515 0.65 +0.5
112,885 - ABID97_RS00515 0.65 +0.1
112,885 - ABID97_RS00515 0.65 +1.4
113,315 + -0.2
113,576 + ABID97_RS00520 0.39 -1.0
113,576 + ABID97_RS00520 0.39 -0.5
113,576 + ABID97_RS00520 0.39 -0.2
113,577 - ABID97_RS00520 0.40 +0.1
113,577 - ABID97_RS00520 0.40 +0.5
114,029 + -0.8
114,240 + ABID97_RS00525 0.23 -0.3
114,240 + ABID97_RS00525 0.23 -1.1
114,240 + ABID97_RS00525 0.23 -0.5
114,240 + ABID97_RS00525 0.23 -0.5
114,240 + ABID97_RS00525 0.23 +0.3
114,241 - ABID97_RS00525 0.24 -0.6
114,241 - ABID97_RS00525 0.24 -1.6
114,241 - ABID97_RS00525 0.24 -0.8
114,241 - ABID97_RS00525 0.24 -0.3
114,241 - ABID97_RS00525 0.24 -0.4
114,241 - ABID97_RS00525 0.24 -0.5
114,241 - ABID97_RS00525 0.24 +0.3
114,241 - ABID97_RS00525 0.24 +0.1

Or see this region's nucleotide sequence