Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00115 and ABID97_RS00120 are separated by 11 nucleotides ABID97_RS00120 and ABID97_RS00125 are separated by 86 nucleotides ABID97_RS00125 and ABID97_RS00130 are separated by 62 nucleotides
ABID97_RS00115: ABID97_RS00115 - carboxyl transferase domain-containing protein, at 24,429 to 27,734
_RS00115
ABID97_RS00120: ABID97_RS00120 - AMP-binding protein, at 27,746 to 29,359
_RS00120
ABID97_RS00125: ABID97_RS00125 - TetR/AcrR family transcriptional regulator, at 29,446 to 30,132
_RS00125
ABID97_RS00130: ABID97_RS00130 - branched-chain amino acid ABC transporter substrate-binding protein, at 30,195 to 31,460
_RS00130
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.139 kb on + strand, within ABID97_RS00115 at 27.139 kb on + strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.140 kb on - strand, within ABID97_RS00115 at 27.559 kb on + strand at 27.837 kb on + strand at 27.837 kb on + strand at 27.838 kb on - strand at 27.838 kb on - strand at 27.838 kb on - strand at 28.023 kb on + strand, within ABID97_RS00120 at 28.159 kb on - strand, within ABID97_RS00120 at 28.159 kb on - strand, within ABID97_RS00120 at 28.308 kb on + strand, within ABID97_RS00120 at 28.308 kb on + strand, within ABID97_RS00120 at 28.308 kb on + strand, within ABID97_RS00120 at 28.309 kb on - strand, within ABID97_RS00120 at 28.309 kb on - strand, within ABID97_RS00120 at 28.512 kb on + strand, within ABID97_RS00120 at 28.530 kb on + strand, within ABID97_RS00120 at 28.530 kb on + strand, within ABID97_RS00120 at 28.641 kb on + strand, within ABID97_RS00120 at 28.641 kb on + strand, within ABID97_RS00120 at 28.773 kb on + strand, within ABID97_RS00120 at 28.773 kb on + strand, within ABID97_RS00120 at 28.773 kb on + strand, within ABID97_RS00120 at 28.773 kb on + strand, within ABID97_RS00120 at 28.774 kb on - strand, within ABID97_RS00120 at 28.774 kb on - strand, within ABID97_RS00120 at 29.312 kb on + strand at 29.313 kb on - strand at 29.442 kb on - strand at 29.451 kb on + strand at 29.452 kb on - strand at 29.452 kb on - strand at 29.453 kb on + strand at 29.608 kb on + strand, within ABID97_RS00125 at 29.609 kb on - strand, within ABID97_RS00125 at 29.668 kb on + strand, within ABID97_RS00125 at 29.669 kb on - strand, within ABID97_RS00125 at 29.669 kb on - strand, within ABID97_RS00125 at 29.669 kb on - strand, within ABID97_RS00125 at 29.671 kb on + strand, within ABID97_RS00125 at 29.672 kb on - strand, within ABID97_RS00125 at 29.674 kb on + strand, within ABID97_RS00125 at 29.674 kb on - strand, within ABID97_RS00125 at 29.675 kb on - strand, within ABID97_RS00125 at 29.870 kb on - strand, within ABID97_RS00125 at 29.881 kb on + strand, within ABID97_RS00125 at 29.881 kb on + strand, within ABID97_RS00125 at 29.881 kb on + strand, within ABID97_RS00125 at 29.882 kb on - strand, within ABID97_RS00125 at 30.026 kb on - strand, within ABID97_RS00125 at 30.026 kb on - strand, within ABID97_RS00125 at 30.285 kb on + strand at 30.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 27,139 + ABID97_RS00115 0.82 -0.4 27,139 + ABID97_RS00115 0.82 -0.0 27,140 - ABID97_RS00115 0.82 +0.1 27,140 - ABID97_RS00115 0.82 +0.3 27,140 - ABID97_RS00115 0.82 -0.0 27,140 - ABID97_RS00115 0.82 +0.0 27,140 - ABID97_RS00115 0.82 +0.5 27,140 - ABID97_RS00115 0.82 +0.6 27,140 - ABID97_RS00115 0.82 +0.3 27,559 + -0.5 27,837 + -0.3 27,837 + +0.3 27,838 - +0.5 27,838 - -1.4 27,838 - -0.5 28,023 + ABID97_RS00120 0.17 -0.3 28,159 - ABID97_RS00120 0.26 -0.1 28,159 - ABID97_RS00120 0.26 +0.5 28,308 + ABID97_RS00120 0.35 -0.2 28,308 + ABID97_RS00120 0.35 -0.9 28,308 + ABID97_RS00120 0.35 -3.3 28,309 - ABID97_RS00120 0.35 +0.2 28,309 - ABID97_RS00120 0.35 +0.1 28,512 + ABID97_RS00120 0.47 -0.4 28,530 + ABID97_RS00120 0.49 +0.6 28,530 + ABID97_RS00120 0.49 -0.0 28,641 + ABID97_RS00120 0.55 +0.3 28,641 + ABID97_RS00120 0.55 +0.4 28,773 + ABID97_RS00120 0.64 -0.7 28,773 + ABID97_RS00120 0.64 -0.1 28,773 + ABID97_RS00120 0.64 +2.7 28,773 + ABID97_RS00120 0.64 -0.0 28,774 - ABID97_RS00120 0.64 -0.3 28,774 - ABID97_RS00120 0.64 +0.6 29,312 + -0.5 29,313 - +0.3 29,442 - -0.9 29,451 + +0.3 29,452 - +1.3 29,452 - -0.3 29,453 + -1.1 29,608 + ABID97_RS00125 0.24 -0.9 29,609 - ABID97_RS00125 0.24 +0.9 29,668 + ABID97_RS00125 0.32 +0.8 29,669 - ABID97_RS00125 0.32 +0.1 29,669 - ABID97_RS00125 0.32 -1.3 29,669 - ABID97_RS00125 0.32 +0.7 29,671 + ABID97_RS00125 0.33 -0.4 29,672 - ABID97_RS00125 0.33 -1.2 29,674 + ABID97_RS00125 0.33 -0.0 29,674 - ABID97_RS00125 0.33 +0.5 29,675 - ABID97_RS00125 0.33 +0.5 29,870 - ABID97_RS00125 0.62 -0.4 29,881 + ABID97_RS00125 0.63 -0.9 29,881 + ABID97_RS00125 0.63 +0.1 29,881 + ABID97_RS00125 0.63 -0.8 29,882 - ABID97_RS00125 0.63 +0.1 30,026 - ABID97_RS00125 0.84 +0.1 30,026 - ABID97_RS00125 0.84 +1.0 30,285 + -0.1 30,297 + +1.0
Or see this region's nucleotide sequence