Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00085 and ABID97_RS00090 are separated by 60 nucleotides ABID97_RS00090 and ABID97_RS00095 are separated by 16 nucleotides ABID97_RS00095 and ABID97_RS00100 are separated by 68 nucleotides ABID97_RS00100 and ABID97_RS00105 are separated by 18 nucleotides
ABID97_RS00085: ABID97_RS00085 - AbrB family transcriptional regulator, at 18,281 to 19,342
_RS00085
ABID97_RS00090: ABID97_RS00090 - ChaN family lipoprotein, at 19,403 to 20,248
_RS00090
ABID97_RS00095: ABID97_RS00095 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,265 to 21,599
_RS00095
ABID97_RS00100: ABID97_RS00100 - formyltetrahydrofolate deformylase, at 21,668 to 22,525
_RS00100
ABID97_RS00105: ABID97_RS00105 - YXWGXW repeat-containing protein, at 22,544 to 22,921
_RS00105
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2
3 at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.394 kb on + strand at 19.772 kb on + strand, within ABID97_RS00090 at 19.772 kb on + strand, within ABID97_RS00090 at 19.898 kb on + strand, within ABID97_RS00090 at 19.899 kb on - strand, within ABID97_RS00090 at 20.180 kb on + strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.222 kb on + strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.246 kb on + strand at 20.246 kb on + strand at 20.247 kb on - strand at 20.247 kb on - strand at 20.335 kb on + strand at 20.336 kb on - strand at 20.336 kb on - strand at 20.336 kb on - strand at 20.336 kb on - strand at 20.414 kb on - strand, within ABID97_RS00095 at 20.632 kb on + strand, within ABID97_RS00095 at 20.633 kb on - strand, within ABID97_RS00095 at 20.633 kb on - strand, within ABID97_RS00095 at 20.633 kb on - strand, within ABID97_RS00095 at 20.894 kb on - strand, within ABID97_RS00095 at 21.043 kb on + strand, within ABID97_RS00095 at 21.043 kb on + strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.169 kb on + strand, within ABID97_RS00095 at 21.169 kb on + strand, within ABID97_RS00095 at 21.227 kb on - strand, within ABID97_RS00095 at 21.374 kb on - strand, within ABID97_RS00095 at 21.374 kb on - strand, within ABID97_RS00095 at 21.374 kb on - strand, within ABID97_RS00095 at 21.592 kb on + strand at 21.592 kb on + strand at 21.592 kb on + strand at 21.593 kb on - strand at 21.593 kb on - strand at 21.593 kb on - strand at 21.689 kb on + strand at 22.070 kb on + strand, within ABID97_RS00100 at 22.070 kb on + strand, within ABID97_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 19,391 + +1.7 19,391 + +0.3 19,391 + +1.0 19,391 + +0.5 19,391 + +0.7 19,391 + +0.4 19,391 + +0.5 19,391 + +1.8 19,392 - +1.3 19,392 - +0.1 19,392 - +0.5 19,392 - -1.0 19,392 - +0.4 19,392 - +1.3 19,392 - -0.3 19,394 + -1.0 19,772 + ABID97_RS00090 0.44 +0.6 19,772 + ABID97_RS00090 0.44 -0.6 19,898 + ABID97_RS00090 0.59 +0.5 19,899 - ABID97_RS00090 0.59 -0.2 20,180 + +0.2 20,181 - +0.3 20,181 - -0.0 20,181 - -1.1 20,222 + +0.1 20,223 - -0.7 20,223 - +0.5 20,223 - +0.0 20,223 - +0.5 20,223 - +0.6 20,246 + +1.3 20,246 + +0.5 20,247 - +0.4 20,247 - -0.5 20,335 + +2.3 20,336 - +2.9 20,336 - +2.0 20,336 - +2.6 20,336 - +2.9 20,414 - ABID97_RS00095 0.11 +2.8 20,632 + ABID97_RS00095 0.27 +2.9 20,633 - ABID97_RS00095 0.28 +3.1 20,633 - ABID97_RS00095 0.28 +2.1 20,633 - ABID97_RS00095 0.28 +3.0 20,894 - ABID97_RS00095 0.47 +2.3 21,043 + ABID97_RS00095 0.58 +2.4 21,043 + ABID97_RS00095 0.58 +2.4 21,044 - ABID97_RS00095 0.58 +2.5 21,044 - ABID97_RS00095 0.58 +2.6 21,044 - ABID97_RS00095 0.58 +2.7 21,044 - ABID97_RS00095 0.58 +2.4 21,169 + ABID97_RS00095 0.68 +2.0 21,169 + ABID97_RS00095 0.68 +1.0 21,227 - ABID97_RS00095 0.72 +2.3 21,374 - ABID97_RS00095 0.83 +2.6 21,374 - ABID97_RS00095 0.83 +2.5 21,374 - ABID97_RS00095 0.83 +2.3 21,592 + +3.2 21,592 + +3.3 21,592 + +2.5 21,593 - +3.3 21,593 - +2.6 21,593 - +2.8 21,689 + +1.3 22,070 + ABID97_RS00100 0.47 +0.3 22,070 + ABID97_RS00100 0.47 -0.3
Or see this region's nucleotide sequence