Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00045

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00040 and ABID97_RS00045 are separated by 22 nucleotidesABID97_RS00045 and ABID97_RS00050 are separated by 23 nucleotidesABID97_RS00050 and ABID97_RS00055 overlap by 4 nucleotides ABID97_RS00040: ABID97_RS00040 - hypothetical protein, at 9,415 to 10,593 _RS00040 ABID97_RS00045: ABID97_RS00045 - tripartite tricarboxylate transporter substrate binding protein, at 10,616 to 11,590 _RS00045 ABID97_RS00050: ABID97_RS00050 - hypothetical protein, at 11,614 to 11,826 _RS00050 ABID97_RS00055: ABID97_RS00055 - FAD-dependent monooxygenase, at 11,823 to 13,613 _RS00055 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1 2at 9.679 kb on + strand, within ABID97_RS00040at 9.680 kb on - strand, within ABID97_RS00040at 9.826 kb on + strand, within ABID97_RS00040at 9.827 kb on - strand, within ABID97_RS00040at 10.048 kb on + strand, within ABID97_RS00040at 10.049 kb on - strand, within ABID97_RS00040at 10.049 kb on - strand, within ABID97_RS00040at 10.049 kb on - strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.304 kb on - strand, within ABID97_RS00040at 10.304 kb on - strand, within ABID97_RS00040at 10.381 kb on + strand, within ABID97_RS00040at 10.591 kb on + strandat 10.591 kb on + strandat 10.591 kb on + strandat 10.591 kb on + strandat 10.592 kb on - strandat 10.592 kb on - strandat 10.592 kb on - strandat 10.592 kb on - strandat 10.853 kb on - strand, within ABID97_RS00045at 10.853 kb on - strand, within ABID97_RS00045at 11.124 kb on + strand, within ABID97_RS00045at 11.124 kb on + strand, within ABID97_RS00045at 11.125 kb on - strand, within ABID97_RS00045at 11.125 kb on - strandat 11.125 kb on - strand, within ABID97_RS00045at 11.125 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.327 kb on - strand, within ABID97_RS00045at 11.327 kb on - strand, within ABID97_RS00045at 11.328 kb on + strand, within ABID97_RS00045at 11.511 kb on + strandat 11.512 kb on - strandat 11.512 kb on - strandat 11.512 kb on - strandat 11.611 kb on + strandat 11.612 kb on - strandat 11.786 kb on + strand, within ABID97_RS00050at 11.787 kb on - strand, within ABID97_RS00050at 12.242 kb on - strand, within ABID97_RS00055at 12.365 kb on + strand, within ABID97_RS00055at 12.422 kb on - strand, within ABID97_RS00055at 12.580 kb on + strand, within ABID97_RS00055at 12.580 kb on + strand, within ABID97_RS00055at 12.581 kb on - strand, within ABID97_RS00055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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9,679 + ABID97_RS00040 0.22 +0.2
9,680 - ABID97_RS00040 0.22 +0.3
9,826 + ABID97_RS00040 0.35 -0.2
9,827 - ABID97_RS00040 0.35 -0.4
10,048 + ABID97_RS00040 0.54 -0.4
10,049 - ABID97_RS00040 0.54 +0.7
10,049 - ABID97_RS00040 0.54 +0.3
10,049 - ABID97_RS00040 0.54 +0.7
10,300 + ABID97_RS00040 0.75 +0.0
10,300 + ABID97_RS00040 0.75 +0.4
10,300 + ABID97_RS00040 0.75 +0.2
10,300 + ABID97_RS00040 0.75 -0.3
10,300 + ABID97_RS00040 0.75 +0.4
10,300 + ABID97_RS00040 0.75 +0.2
10,300 + ABID97_RS00040 0.75 +0.1
10,301 - ABID97_RS00040 0.75 +0.8
10,301 - ABID97_RS00040 0.75 +0.3
10,301 - ABID97_RS00040 0.75 -0.5
10,301 - ABID97_RS00040 0.75 -0.2
10,301 - ABID97_RS00040 0.75 +0.8
10,301 - ABID97_RS00040 0.75 -0.2
10,301 - ABID97_RS00040 0.75 -0.3
10,303 + ABID97_RS00040 0.75 +0.3
10,303 + ABID97_RS00040 0.75 +0.3
10,303 + ABID97_RS00040 0.75 +0.0
10,303 + ABID97_RS00040 0.75 +1.8
10,303 + ABID97_RS00040 0.75 +0.0
10,304 - ABID97_RS00040 0.75 -0.6
10,304 - ABID97_RS00040 0.75 -0.4
10,381 + ABID97_RS00040 0.82 -0.0
10,591 + +0.4
10,591 + -1.1
10,591 + +0.2
10,591 + -0.9
10,592 - -0.7
10,592 - -1.1
10,592 - +0.4
10,592 - +0.1
10,853 - ABID97_RS00045 0.24 -0.1
10,853 - ABID97_RS00045 0.24 +0.4
11,124 + ABID97_RS00045 0.52 -0.4
11,124 + ABID97_RS00045 0.52 -0.1
11,125 - ABID97_RS00045 0.52 +0.4
11,125 - +2.3
11,125 - ABID97_RS00045 0.52 +0.4
11,125 - ABID97_RS00045 0.52 +0.7
11,155 - ABID97_RS00045 0.55 -1.1
11,155 - ABID97_RS00045 0.55 +0.3
11,155 - ABID97_RS00045 0.55 +1.5
11,155 - ABID97_RS00045 0.55 +0.2
11,238 + ABID97_RS00045 0.64 +0.3
11,238 + ABID97_RS00045 0.64 +0.2
11,238 + ABID97_RS00045 0.64 +0.6
11,238 + ABID97_RS00045 0.64 +0.0
11,238 + ABID97_RS00045 0.64 +1.9
11,238 + ABID97_RS00045 0.64 -0.5
11,238 + ABID97_RS00045 0.64 +0.1
11,238 + ABID97_RS00045 0.64 +0.5
11,238 + ABID97_RS00045 0.64 +0.1
11,238 + ABID97_RS00045 0.64 +0.6
11,239 - ABID97_RS00045 0.64 -0.1
11,239 - ABID97_RS00045 0.64 +0.9
11,239 - ABID97_RS00045 0.64 -0.2
11,239 - ABID97_RS00045 0.64 +0.1
11,326 + ABID97_RS00045 0.73 +0.8
11,326 + ABID97_RS00045 0.73 +0.5
11,326 + ABID97_RS00045 0.73 +0.7
11,326 + ABID97_RS00045 0.73 +0.1
11,327 - ABID97_RS00045 0.73 -0.3
11,327 - ABID97_RS00045 0.73 -0.0
11,328 + ABID97_RS00045 0.73 -0.5
11,511 + -0.2
11,512 - +0.3
11,512 - -0.4
11,512 - +0.8
11,611 + +0.5
11,612 - -0.1
11,786 + ABID97_RS00050 0.81 +0.0
11,787 - ABID97_RS00050 0.81 +0.8
12,242 - ABID97_RS00055 0.23 -0.4
12,365 + ABID97_RS00055 0.30 -0.2
12,422 - ABID97_RS00055 0.33 +0.3
12,580 + ABID97_RS00055 0.42 +1.2
12,580 + ABID97_RS00055 0.42 +0.8
12,581 - ABID97_RS00055 0.42 -0.5

Or see this region's nucleotide sequence