Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5154 and PfGW456L13_5155 are separated by 250 nucleotides PfGW456L13_5155 and PfGW456L13_5156 are separated by 33 nucleotides PfGW456L13_5156 and PfGW456L13_5157 are separated by 81 nucleotides PfGW456L13_5157 and PfGW456L13_2 are separated by 589 nucleotides
PfGW456L13_5154 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 322 to 3,216
_5154
PfGW456L13_5155 - tRNA-Ala-TGC, at 3,467 to 3,539
_5155
PfGW456L13_5156 - tRNA-Ile-GAT, at 3,573 to 3,646
_5156
PfGW456L13_5157 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 3,728 to 5,256
_5157
PfGW456L13_2 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 5,846 to 7,339
_2
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.666 kb on - strand at 3.707 kb on - strand at 3.707 kb on - strand at 5.537 kb on - strand at 5.730 kb on + strand at 5.732 kb on + strand at 5.760 kb on + strand at 5.760 kb on + strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.779 kb on + strand at 5.779 kb on + strand at 5.779 kb on + strand at 5.779 kb on + strand at 5.779 kb on + strand at 5.780 kb on - strand at 5.780 kb on - strand at 5.780 kb on - strand at 5.780 kb on - strand at 5.781 kb on + strand at 5.781 kb on + strand at 5.782 kb on - strand at 5.843 kb on + strand at 5.843 kb on + strand at 5.843 kb on + strand at 5.843 kb on + strand at 5.843 kb on + strand at 5.843 kb on + strand at 5.844 kb on - strand at 5.847 kb on + strand at 5.847 kb on + strand at 5.847 kb on + strand at 5.847 kb on + strand at 5.847 kb on + strand at 5.847 kb on + strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.855 kb on - strand at 6.026 kb on + strand, within PfGW456L13_2 at 6.118 kb on - strand, within PfGW456L13_2 at 6.118 kb on - strand, within PfGW456L13_2 at 6.118 kb on - strand, within PfGW456L13_2 at 6.204 kb on + strand, within PfGW456L13_2 at 6.204 kb on + strand, within PfGW456L13_2 at 6.204 kb on + strand, within PfGW456L13_2 at 6.204 kb on + strand, within PfGW456L13_2 at 6.204 kb on + strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2 at 6.205 kb on - strand, within PfGW456L13_2
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,666 - -1.9 3,707 - -1.0 3,707 - +0.7 5,537 - -0.9 5,730 + +1.0 5,732 + +0.8 5,760 + +0.9 5,760 + +1.0 5,761 - -0.3 5,761 - -1.2 5,761 - -2.7 5,761 - -3.1 5,761 - +1.7 5,779 + +0.3 5,779 + -0.8 5,779 + +1.0 5,779 + -2.1 5,779 + +0.7 5,780 - +1.2 5,780 - -0.3 5,780 - -0.2 5,780 - -1.3 5,781 + -0.4 5,781 + +0.5 5,782 - -0.3 5,843 + -1.4 5,843 + -0.6 5,843 + +1.0 5,843 + +0.8 5,843 + +0.6 5,843 + -0.4 5,844 - -0.0 5,847 + +0.4 5,847 + -1.6 5,847 + +0.7 5,847 + -1.0 5,847 + +0.7 5,847 + +0.0 5,848 - -1.7 5,848 - +2.1 5,848 - +1.4 5,848 - +1.0 5,848 - -0.0 5,848 - -1.9 5,848 - -0.6 5,848 - -0.2 5,848 - +1.2 5,848 - -0.2 5,848 - -0.3 5,855 - -0.3 6,026 + PfGW456L13_2 0.12 +0.4 6,118 - PfGW456L13_2 0.18 +1.8 6,118 - PfGW456L13_2 0.18 -1.5 6,118 - PfGW456L13_2 0.18 -1.0 6,204 + PfGW456L13_2 0.24 -0.9 6,204 + PfGW456L13_2 0.24 -0.2 6,204 + PfGW456L13_2 0.24 -0.7 6,204 + PfGW456L13_2 0.24 +1.7 6,204 + PfGW456L13_2 0.24 +0.4 6,205 - PfGW456L13_2 0.24 +0.1 6,205 - PfGW456L13_2 0.24 -0.4 6,205 - PfGW456L13_2 0.24 -1.2 6,205 - PfGW456L13_2 0.24 -2.4 6,205 - PfGW456L13_2 0.24 -0.2 6,205 - PfGW456L13_2 0.24 -0.7 6,205 - PfGW456L13_2 0.24 +2.3 6,205 - PfGW456L13_2 0.24 -1.3
Or see this region's nucleotide sequence