Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4750

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4749 and PfGW456L13_4750 are separated by 51 nucleotidesPfGW456L13_4750 and PfGW456L13_4751 are separated by 421 nucleotides PfGW456L13_4749 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 5,291,611 to 5,293,176 _4749 PfGW456L13_4750 - Peptide chain release factor 2; programmed frameshift-containing, at 5,293,228 to 5,294,109 _4750 PfGW456L13_4751 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 5,294,531 to 5,295,532 _4751 Position (kb) 5293 5294 5295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5293.124 kb on - strandat 5294.421 kb on + strandat 5294.421 kb on + strandat 5294.422 kb on - strandat 5294.422 kb on - strandat 5294.463 kb on + strandat 5294.472 kb on - strandat 5294.472 kb on - strandat 5294.635 kb on + strand, within PfGW456L13_4751at 5294.635 kb on + strand, within PfGW456L13_4751at 5294.635 kb on + strand, within PfGW456L13_4751at 5294.636 kb on - strand, within PfGW456L13_4751at 5294.636 kb on - strand, within PfGW456L13_4751at 5294.686 kb on + strand, within PfGW456L13_4751at 5294.687 kb on - strand, within PfGW456L13_4751at 5294.895 kb on + strand, within PfGW456L13_4751at 5294.895 kb on + strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.907 kb on + strand, within PfGW456L13_4751at 5294.908 kb on - strand, within PfGW456L13_4751at 5294.979 kb on + strand, within PfGW456L13_4751at 5294.979 kb on + strand, within PfGW456L13_4751at 5294.979 kb on + strand, within PfGW456L13_4751at 5294.980 kb on - strand, within PfGW456L13_4751at 5294.980 kb on - strand, within PfGW456L13_4751

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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5,293,124 - +0.1
5,294,421 + -1.4
5,294,421 + -0.5
5,294,422 - +0.8
5,294,422 - -0.9
5,294,463 + -1.2
5,294,472 - -3.1
5,294,472 - -0.6
5,294,635 + PfGW456L13_4751 0.10 +1.1
5,294,635 + PfGW456L13_4751 0.10 -1.3
5,294,635 + PfGW456L13_4751 0.10 -0.3
5,294,636 - PfGW456L13_4751 0.10 +0.1
5,294,636 - PfGW456L13_4751 0.10 -0.8
5,294,686 + PfGW456L13_4751 0.15 -2.0
5,294,687 - PfGW456L13_4751 0.16 +0.6
5,294,895 + PfGW456L13_4751 0.36 -1.5
5,294,895 + PfGW456L13_4751 0.36 -2.4
5,294,896 - PfGW456L13_4751 0.36 +0.3
5,294,896 - PfGW456L13_4751 0.36 -1.3
5,294,896 - PfGW456L13_4751 0.36 +0.6
5,294,896 - PfGW456L13_4751 0.36 -0.8
5,294,907 + PfGW456L13_4751 0.38 -2.2
5,294,908 - PfGW456L13_4751 0.38 +1.2
5,294,979 + PfGW456L13_4751 0.45 +2.1
5,294,979 + PfGW456L13_4751 0.45 -2.5
5,294,979 + PfGW456L13_4751 0.45 -0.6
5,294,980 - PfGW456L13_4751 0.45 -0.3
5,294,980 - PfGW456L13_4751 0.45 -0.6

Or see this region's nucleotide sequence