Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_366 and PfGW456L13_367 overlap by 4 nucleotides PfGW456L13_367 and PfGW456L13_5160 are separated by 103 nucleotides PfGW456L13_5160 and PfGW456L13_368 are separated by 321 nucleotides
PfGW456L13_366 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 426,544 to 427,611
_366
PfGW456L13_367 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 427,608 to 427,880
_367
PfGW456L13_5160 - tRNA-Phe-GAA, at 427,984 to 428,056
_5160
PfGW456L13_368 - hypothetical protein, at 428,378 to 429,457
_368
Position (kb) 427
428 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 426.694 kb on + strand, within PfGW456L13_366 at 426.695 kb on - strand, within PfGW456L13_366 at 426.788 kb on - strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.791 kb on - strand, within PfGW456L13_366 at 427.082 kb on - strand, within PfGW456L13_366 at 427.082 kb on - strand, within PfGW456L13_366 at 427.286 kb on - strand, within PfGW456L13_366 at 427.514 kb on - strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.800 kb on + strand, within PfGW456L13_367 at 427.800 kb on + strand, within PfGW456L13_367 at 427.800 kb on + strand, within PfGW456L13_367 at 427.801 kb on - strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.860 kb on + strand at 427.861 kb on - strand at 427.861 kb on - strand at 427.861 kb on - strand at 428.200 kb on + strand at 428.201 kb on - strand at 428.272 kb on + strand at 428.297 kb on + strand at 428.297 kb on + strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.357 kb on + strand at 428.358 kb on - strand at 428.358 kb on - strand at 428.358 kb on - strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.562 kb on + strand, within PfGW456L13_368 at 428.562 kb on + strand, within PfGW456L13_368 at 428.562 kb on + strand, within PfGW456L13_368 at 428.563 kb on - strand at 428.563 kb on - strand, within PfGW456L13_368 at 428.563 kb on - strand, within PfGW456L13_368 at 428.563 kb on - strand, within PfGW456L13_368 at 428.606 kb on + strand, within PfGW456L13_368 at 428.606 kb on + strand, within PfGW456L13_368 at 428.607 kb on - strand, within PfGW456L13_368 at 428.607 kb on - strand, within PfGW456L13_368 at 428.781 kb on - strand, within PfGW456L13_368 at 428.781 kb on - strand, within PfGW456L13_368
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 426,694 + PfGW456L13_366 0.14 -0.4 426,695 - PfGW456L13_366 0.14 -0.2 426,788 - PfGW456L13_366 0.23 -0.2 426,790 + PfGW456L13_366 0.23 +0.9 426,790 + PfGW456L13_366 0.23 -0.8 426,790 + PfGW456L13_366 0.23 -1.1 426,790 + PfGW456L13_366 0.23 -1.4 426,790 + PfGW456L13_366 0.23 -0.6 426,791 - PfGW456L13_366 0.23 -0.0 427,082 - PfGW456L13_366 0.50 -0.2 427,082 - PfGW456L13_366 0.50 +1.6 427,286 - PfGW456L13_366 0.69 -0.5 427,514 - -1.7 427,515 + -1.0 427,515 + +0.2 427,515 + -0.5 427,515 + -0.6 427,800 + PfGW456L13_367 0.70 +2.1 427,800 + PfGW456L13_367 0.70 +0.8 427,800 + PfGW456L13_367 0.70 +0.8 427,801 - PfGW456L13_367 0.71 +0.1 427,824 + PfGW456L13_367 0.79 +2.0 427,824 + PfGW456L13_367 0.79 +1.5 427,824 + PfGW456L13_367 0.79 -0.7 427,825 - PfGW456L13_367 0.79 -1.3 427,825 - PfGW456L13_367 0.79 +1.9 427,825 - PfGW456L13_367 0.79 +0.0 427,825 - PfGW456L13_367 0.79 +0.6 427,860 + +1.3 427,861 - +0.2 427,861 - +0.5 427,861 - +0.8 428,200 + +0.3 428,201 - +3.4 428,272 + -0.3 428,297 + -0.2 428,297 + -0.8 428,298 - +0.7 428,298 - +1.1 428,298 - +1.2 428,298 - -0.2 428,298 - -0.3 428,298 - -1.0 428,298 - +0.5 428,298 - +1.5 428,357 + -1.6 428,358 - -1.2 428,358 - +1.3 428,358 - +0.4 428,372 + +1.8 428,372 + +0.3 428,372 + -0.3 428,372 + -0.3 428,372 + +0.7 428,372 + +0.6 428,372 + +0.4 428,372 + -0.1 428,372 + +0.4 428,372 + +0.7 428,372 + -0.5 428,372 + -1.6 428,372 + +1.0 428,373 - -1.1 428,373 - +0.7 428,373 - -0.3 428,373 - +2.2 428,373 - +2.8 428,373 - +0.6 428,373 - -0.3 428,373 - -0.1 428,373 - +1.1 428,373 - +0.2 428,373 - -0.6 428,373 - +0.3 428,373 - +1.0 428,373 - -0.7 428,373 - -2.0 428,373 - +0.2 428,373 - +0.5 428,373 - +0.9 428,562 + PfGW456L13_368 0.17 +0.3 428,562 + PfGW456L13_368 0.17 -1.1 428,562 + PfGW456L13_368 0.17 +0.1 428,563 - +2.4 428,563 - PfGW456L13_368 0.17 -1.4 428,563 - PfGW456L13_368 0.17 +0.5 428,563 - PfGW456L13_368 0.17 +0.6 428,606 + PfGW456L13_368 0.21 -1.0 428,606 + PfGW456L13_368 0.21 -0.5 428,607 - PfGW456L13_368 0.21 -1.6 428,607 - PfGW456L13_368 0.21 -2.6 428,781 - PfGW456L13_368 0.37 -1.1 428,781 - PfGW456L13_368 0.37 -0.6
Or see this region's nucleotide sequence