Strain Fitness in Pseudomonas simiae WCS417 around PS417_27465

Experiment: Thallium(I) acetate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27455 and PS417_27460 are separated by 47 nucleotidesPS417_27460 and PS417_27465 are separated by 1 nucleotidesPS417_27465 and PS417_27470 are separated by 270 nucleotidesPS417_27470 and PS417_27475 are separated by 88 nucleotides PS417_27455: PS417_27455 - isoprenoid biosynthesis protein, at 5,925,770 to 5,926,435 _27455 PS417_27460: PS417_27460 - hypothetical protein, at 5,926,483 to 5,926,938 _27460 PS417_27465: PS417_27465 - cystathionine gamma-synthase, at 5,926,940 to 5,928,835 _27465 PS417_27470: PS417_27470 - threonine transporter RhtB, at 5,929,106 to 5,929,738 _27470 PS417_27475: PS417_27475 - membrane protein, at 5,929,827 to 5,930,399 _27475 Position (kb) 5926 5927 5928 5929Strain fitness (log2 ratio) -1 0 1 2 3at 5925.960 kb on + strand, within PS417_27455at 5925.961 kb on - strand, within PS417_27455at 5926.177 kb on + strand, within PS417_27455at 5926.178 kb on - strand, within PS417_27455at 5926.178 kb on - strand, within PS417_27455at 5926.205 kb on + strand, within PS417_27455at 5926.205 kb on + strand, within PS417_27455at 5926.205 kb on + strand, within PS417_27455at 5926.206 kb on - strand, within PS417_27455at 5926.206 kb on - strand, within PS417_27455at 5926.206 kb on - strand, within PS417_27455at 5926.346 kb on + strand, within PS417_27455at 5926.346 kb on + strand, within PS417_27455at 5926.346 kb on + strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.348 kb on + strand, within PS417_27455at 5926.348 kb on + strand, within PS417_27455at 5926.503 kb on + strandat 5926.753 kb on + strand, within PS417_27460at 5926.754 kb on - strand, within PS417_27460at 5926.760 kb on + strand, within PS417_27460at 5926.760 kb on + strand, within PS417_27460at 5926.761 kb on - strand, within PS417_27460at 5926.761 kb on - strand, within PS417_27460at 5926.792 kb on + strand, within PS417_27460at 5926.983 kb on + strandat 5926.983 kb on + strandat 5926.984 kb on - strandat 5926.984 kb on - strandat 5927.032 kb on - strandat 5927.032 kb on - strandat 5927.135 kb on + strand, within PS417_27465at 5927.136 kb on - strand, within PS417_27465at 5927.393 kb on + strand, within PS417_27465at 5927.412 kb on + strand, within PS417_27465at 5927.412 kb on + strand, within PS417_27465at 5927.413 kb on - strand, within PS417_27465at 5927.413 kb on - strand, within PS417_27465at 5927.413 kb on - strand, within PS417_27465at 5927.542 kb on - strand, within PS417_27465at 5927.712 kb on + strand, within PS417_27465at 5927.712 kb on + strand, within PS417_27465at 5927.712 kb on + strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.925 kb on + strand, within PS417_27465at 5927.926 kb on - strand, within PS417_27465at 5927.926 kb on - strand, within PS417_27465at 5928.010 kb on - strand, within PS417_27465at 5928.104 kb on + strand, within PS417_27465at 5928.104 kb on + strand, within PS417_27465at 5928.105 kb on - strand, within PS417_27465at 5928.105 kb on - strand, within PS417_27465at 5928.195 kb on + strand, within PS417_27465at 5928.195 kb on + strand, within PS417_27465at 5928.195 kb on + strand, within PS417_27465at 5928.195 kb on + strand, within PS417_27465at 5928.196 kb on - strand, within PS417_27465at 5928.196 kb on - strand, within PS417_27465at 5928.196 kb on - strand, within PS417_27465at 5928.196 kb on - strand, within PS417_27465at 5928.196 kb on - strand, within PS417_27465at 5928.285 kb on + strand, within PS417_27465at 5928.286 kb on - strand, within PS417_27465at 5928.353 kb on - strand, within PS417_27465at 5928.475 kb on - strand, within PS417_27465at 5928.717 kb on + strandat 5928.717 kb on + strandat 5928.717 kb on + strandat 5928.718 kb on - strandat 5928.718 kb on - strandat 5928.856 kb on + strandat 5928.863 kb on + strandat 5928.863 kb on + strandat 5928.902 kb on + strandat 5928.902 kb on + strandat 5928.934 kb on - strandat 5929.108 kb on - strandat 5929.196 kb on - strand, within PS417_27470at 5929.238 kb on - strand, within PS417_27470at 5929.238 kb on - strand, within PS417_27470at 5929.293 kb on + strand, within PS417_27470at 5929.337 kb on + strand, within PS417_27470at 5929.485 kb on + strand, within PS417_27470at 5929.486 kb on - strand, within PS417_27470at 5929.521 kb on + strand, within PS417_27470at 5929.522 kb on - strand, within PS417_27470at 5929.522 kb on - strand, within PS417_27470at 5929.522 kb on - strand, within PS417_27470at 5929.522 kb on - strand, within PS417_27470at 5929.620 kb on + strand, within PS417_27470at 5929.639 kb on - strand, within PS417_27470at 5929.726 kb on + strandat 5929.778 kb on + strandat 5929.779 kb on - strandat 5929.805 kb on - strandat 5929.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0625 mg/ml
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5,925,960 + PS417_27455 0.29 +0.5
5,925,961 - PS417_27455 0.29 +0.6
5,926,177 + PS417_27455 0.61 -0.3
5,926,178 - PS417_27455 0.61 -0.1
5,926,178 - PS417_27455 0.61 +1.0
5,926,205 + PS417_27455 0.65 -0.0
5,926,205 + PS417_27455 0.65 +0.5
5,926,205 + PS417_27455 0.65 -0.1
5,926,206 - PS417_27455 0.65 -0.5
5,926,206 - PS417_27455 0.65 +0.7
5,926,206 - PS417_27455 0.65 -0.5
5,926,346 + PS417_27455 0.86 +0.9
5,926,346 + PS417_27455 0.86 +0.4
5,926,346 + PS417_27455 0.86 +1.2
5,926,347 - PS417_27455 0.87 +3.0
5,926,347 - PS417_27455 0.87 +0.5
5,926,347 - PS417_27455 0.87 -0.4
5,926,347 - PS417_27455 0.87 -0.5
5,926,348 + PS417_27455 0.87 +0.8
5,926,348 + PS417_27455 0.87 +0.4
5,926,503 + +2.4
5,926,753 + PS417_27460 0.59 +0.2
5,926,754 - PS417_27460 0.59 -0.1
5,926,760 + PS417_27460 0.61 -0.3
5,926,760 + PS417_27460 0.61 +0.0
5,926,761 - PS417_27460 0.61 -0.1
5,926,761 - PS417_27460 0.61 -0.3
5,926,792 + PS417_27460 0.68 +0.0
5,926,983 + -0.0
5,926,983 + +0.3
5,926,984 - -0.9
5,926,984 - +1.0
5,927,032 - +1.2
5,927,032 - +0.2
5,927,135 + PS417_27465 0.10 +0.3
5,927,136 - PS417_27465 0.10 -0.1
5,927,393 + PS417_27465 0.24 -0.2
5,927,412 + PS417_27465 0.25 -0.1
5,927,412 + PS417_27465 0.25 +0.2
5,927,413 - PS417_27465 0.25 +0.3
5,927,413 - PS417_27465 0.25 +0.2
5,927,413 - PS417_27465 0.25 -0.1
5,927,542 - PS417_27465 0.32 +0.1
5,927,712 + PS417_27465 0.41 -0.4
5,927,712 + PS417_27465 0.41 +0.4
5,927,712 + PS417_27465 0.41 -0.3
5,927,713 - PS417_27465 0.41 -0.6
5,927,713 - PS417_27465 0.41 -0.0
5,927,713 - PS417_27465 0.41 -0.5
5,927,713 - PS417_27465 0.41 -0.2
5,927,925 + PS417_27465 0.52 -0.4
5,927,926 - PS417_27465 0.52 -0.4
5,927,926 - PS417_27465 0.52 +0.3
5,928,010 - PS417_27465 0.56 +1.2
5,928,104 + PS417_27465 0.61 -0.0
5,928,104 + PS417_27465 0.61 +0.4
5,928,105 - PS417_27465 0.61 +0.6
5,928,105 - PS417_27465 0.61 -0.4
5,928,195 + PS417_27465 0.66 +0.1
5,928,195 + PS417_27465 0.66 -0.1
5,928,195 + PS417_27465 0.66 -0.2
5,928,195 + PS417_27465 0.66 -1.1
5,928,196 - PS417_27465 0.66 +0.1
5,928,196 - PS417_27465 0.66 +1.1
5,928,196 - PS417_27465 0.66 +1.2
5,928,196 - PS417_27465 0.66 +1.0
5,928,196 - PS417_27465 0.66 -0.2
5,928,285 + PS417_27465 0.71 -0.5
5,928,286 - PS417_27465 0.71 +0.8
5,928,353 - PS417_27465 0.75 +1.5
5,928,475 - PS417_27465 0.81 -0.0
5,928,717 + +1.7
5,928,717 + +0.3
5,928,717 + -0.4
5,928,718 - -0.4
5,928,718 - -0.2
5,928,856 + -0.8
5,928,863 + -0.4
5,928,863 + +0.2
5,928,902 + -0.9
5,928,902 + -0.1
5,928,934 - -0.9
5,929,108 - -0.6
5,929,196 - PS417_27470 0.14 -0.6
5,929,238 - PS417_27470 0.21 -0.2
5,929,238 - PS417_27470 0.21 -0.6
5,929,293 + PS417_27470 0.30 -0.3
5,929,337 + PS417_27470 0.36 -1.0
5,929,485 + PS417_27470 0.60 -0.1
5,929,486 - PS417_27470 0.60 -0.4
5,929,521 + PS417_27470 0.66 -0.7
5,929,522 - PS417_27470 0.66 -0.7
5,929,522 - PS417_27470 0.66 +0.3
5,929,522 - PS417_27470 0.66 -0.3
5,929,522 - PS417_27470 0.66 +0.2
5,929,620 + PS417_27470 0.81 +1.0
5,929,639 - PS417_27470 0.84 -1.2
5,929,726 + +0.5
5,929,778 + -1.7
5,929,779 - +0.1
5,929,805 - +0.1
5,929,813 - -0.9

Or see this region's nucleotide sequence