Strain Fitness in Pseudomonas simiae WCS417 around PS417_17630

Experiment: Thallium(I) acetate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17625 and PS417_17630 are separated by 119 nucleotidesPS417_17630 and PS417_17635 are separated by 365 nucleotides PS417_17625: PS417_17625 - ornithine monooxygenase, at 3,846,448 to 3,847,785 _17625 PS417_17630: PS417_17630 - RNA polymerase sigma factor, at 3,847,905 to 3,848,387 _17630 PS417_17635: PS417_17635 - hemolysin secretion protein D, at 3,848,753 to 3,849,922 _17635 Position (kb) 3847 3848 3849Strain fitness (log2 ratio) -1 0 1 2at 3846.932 kb on + strand, within PS417_17625at 3846.947 kb on + strand, within PS417_17625at 3847.209 kb on - strand, within PS417_17625at 3847.312 kb on + strand, within PS417_17625at 3847.312 kb on + strand, within PS417_17625at 3847.312 kb on + strand, within PS417_17625at 3847.312 kb on + strand, within PS417_17625at 3847.312 kb on + strand, within PS417_17625at 3847.313 kb on - strandat 3847.313 kb on - strand, within PS417_17625at 3847.313 kb on - strand, within PS417_17625at 3847.313 kb on - strand, within PS417_17625at 3847.313 kb on - strandat 3847.313 kb on - strand, within PS417_17625at 3847.313 kb on - strand, within PS417_17625at 3847.460 kb on + strand, within PS417_17625at 3847.461 kb on - strand, within PS417_17625at 3847.478 kb on + strand, within PS417_17625at 3847.479 kb on - strandat 3847.534 kb on - strand, within PS417_17625at 3847.885 kb on - strandat 3848.296 kb on + strand, within PS417_17630at 3848.297 kb on - strand, within PS417_17630at 3848.476 kb on + strandat 3848.536 kb on + strandat 3848.542 kb on + strandat 3848.542 kb on + strandat 3848.655 kb on - strandat 3848.662 kb on + strandat 3848.662 kb on + strandat 3848.663 kb on - strandat 3848.667 kb on - strandat 3848.667 kb on - strandat 3848.700 kb on - strandat 3848.920 kb on - strand, within PS417_17635at 3848.934 kb on - strand, within PS417_17635at 3848.934 kb on - strand, within PS417_17635at 3848.934 kb on - strand, within PS417_17635at 3849.312 kb on - strand, within PS417_17635at 3849.312 kb on - strand, within PS417_17635at 3849.312 kb on - strand, within PS417_17635

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0625 mg/ml
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3,846,932 + PS417_17625 0.36 -0.4
3,846,947 + PS417_17625 0.37 -0.1
3,847,209 - PS417_17625 0.57 +1.1
3,847,312 + PS417_17625 0.65 +0.3
3,847,312 + PS417_17625 0.65 +0.4
3,847,312 + PS417_17625 0.65 +0.5
3,847,312 + PS417_17625 0.65 -0.4
3,847,312 + PS417_17625 0.65 +1.2
3,847,313 - +2.2
3,847,313 - PS417_17625 0.65 -0.2
3,847,313 - PS417_17625 0.65 +0.5
3,847,313 - PS417_17625 0.65 -0.7
3,847,313 - -0.4
3,847,313 - PS417_17625 0.65 -0.7
3,847,313 - PS417_17625 0.65 +2.2
3,847,460 + PS417_17625 0.76 +0.9
3,847,461 - PS417_17625 0.76 -1.0
3,847,478 + PS417_17625 0.77 +0.9
3,847,479 - +0.2
3,847,534 - PS417_17625 0.81 -0.2
3,847,885 - +0.0
3,848,296 + PS417_17630 0.81 +0.5
3,848,297 - PS417_17630 0.81 +1.0
3,848,476 + +1.1
3,848,536 + +0.7
3,848,542 + -0.5
3,848,542 + -0.3
3,848,655 - +1.2
3,848,662 + -0.0
3,848,662 + +0.7
3,848,663 - -1.1
3,848,667 - +0.4
3,848,667 - -0.1
3,848,700 - +0.7
3,848,920 - PS417_17635 0.14 +0.2
3,848,934 - PS417_17635 0.15 -0.4
3,848,934 - PS417_17635 0.15 -1.4
3,848,934 - PS417_17635 0.15 -0.6
3,849,312 - PS417_17635 0.48 -1.1
3,849,312 - PS417_17635 0.48 -0.8
3,849,312 - PS417_17635 0.48 -0.5

Or see this region's nucleotide sequence