Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4391 and EX28DRAFT_4392 are separated by 107 nucleotides EX28DRAFT_4392 and EX28DRAFT_4393 are separated by 73 nucleotides EX28DRAFT_4393 and EX28DRAFT_4394 are separated by 48 nucleotides EX28DRAFT_4394 and EX28DRAFT_4395 are separated by 111 nucleotides
EX28DRAFT_4391: EX28DRAFT_4391 - sulfate/thiosulfate-binding protein, at 54,236 to 55,225
_4391
EX28DRAFT_4392: EX28DRAFT_4392 - CDP-diacylglycerol diphosphatase, bacterial type, at 55,333 to 56,076
_4392
EX28DRAFT_4393: EX28DRAFT_4393 - Di- and tricarboxylate transporters, at 56,150 to 57,454
_4393
EX28DRAFT_4394: EX28DRAFT_4394 - triosephosphate isomerase (EC 5.3.1.1), at 57,503 to 58,270
_4394
EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978
_4395
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 55.189 kb on + strand at 55.277 kb on - strand at 55.298 kb on - strand at 55.349 kb on + strand at 55.429 kb on - strand, within EX28DRAFT_4392 at 55.510 kb on + strand, within EX28DRAFT_4392 at 55.510 kb on + strand, within EX28DRAFT_4392 at 55.511 kb on - strand, within EX28DRAFT_4392 at 55.518 kb on - strand, within EX28DRAFT_4392 at 55.518 kb on - strand, within EX28DRAFT_4392 at 55.521 kb on + strand, within EX28DRAFT_4392 at 55.565 kb on - strand, within EX28DRAFT_4392 at 55.650 kb on + strand, within EX28DRAFT_4392 at 55.651 kb on - strand, within EX28DRAFT_4392 at 55.704 kb on + strand, within EX28DRAFT_4392 at 55.704 kb on + strand, within EX28DRAFT_4392 at 55.741 kb on - strand, within EX28DRAFT_4392 at 55.741 kb on - strand, within EX28DRAFT_4392 at 55.747 kb on - strand, within EX28DRAFT_4392 at 55.747 kb on - strand, within EX28DRAFT_4392 at 55.850 kb on - strand, within EX28DRAFT_4392 at 55.850 kb on - strand, within EX28DRAFT_4392 at 55.899 kb on + strand, within EX28DRAFT_4392 at 56.086 kb on - strand at 56.118 kb on - strand at 56.149 kb on + strand at 56.242 kb on + strand at 56.468 kb on + strand, within EX28DRAFT_4393 at 56.484 kb on + strand, within EX28DRAFT_4393 at 56.484 kb on + strand, within EX28DRAFT_4393 at 56.484 kb on + strand, within EX28DRAFT_4393 at 56.485 kb on - strand, within EX28DRAFT_4393 at 56.684 kb on + strand, within EX28DRAFT_4393 at 56.702 kb on + strand, within EX28DRAFT_4393 at 56.703 kb on - strand, within EX28DRAFT_4393 at 57.016 kb on + strand, within EX28DRAFT_4393 at 57.017 kb on - strand, within EX28DRAFT_4393 at 57.081 kb on + strand, within EX28DRAFT_4393 at 57.082 kb on - strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.155 kb on - strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.179 kb on - strand, within EX28DRAFT_4393 at 57.206 kb on + strand, within EX28DRAFT_4393 at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.399 kb on - strand at 57.399 kb on - strand at 57.423 kb on - strand at 57.441 kb on + strand at 57.441 kb on + strand at 57.453 kb on - strand at 57.464 kb on - strand at 57.505 kb on - strand at 58.409 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 55,189 + +1.5 55,277 - -0.0 55,298 - +0.9 55,349 + -1.0 55,429 - EX28DRAFT_4392 0.13 +0.1 55,510 + EX28DRAFT_4392 0.24 -1.4 55,510 + EX28DRAFT_4392 0.24 +0.4 55,511 - EX28DRAFT_4392 0.24 +0.5 55,518 - EX28DRAFT_4392 0.25 -0.2 55,518 - EX28DRAFT_4392 0.25 +1.5 55,521 + EX28DRAFT_4392 0.25 +0.1 55,565 - EX28DRAFT_4392 0.31 +2.6 55,650 + EX28DRAFT_4392 0.43 +1.2 55,651 - EX28DRAFT_4392 0.43 -1.6 55,704 + EX28DRAFT_4392 0.50 +0.2 55,704 + EX28DRAFT_4392 0.50 -0.3 55,741 - EX28DRAFT_4392 0.55 +1.0 55,741 - EX28DRAFT_4392 0.55 +0.5 55,747 - EX28DRAFT_4392 0.56 +1.9 55,747 - EX28DRAFT_4392 0.56 +1.6 55,850 - EX28DRAFT_4392 0.69 -0.2 55,850 - EX28DRAFT_4392 0.69 -0.6 55,899 + EX28DRAFT_4392 0.76 -1.0 56,086 - +1.2 56,118 - -0.1 56,149 + -0.1 56,242 + -0.9 56,468 + EX28DRAFT_4393 0.24 +0.7 56,484 + EX28DRAFT_4393 0.26 -0.6 56,484 + EX28DRAFT_4393 0.26 -0.1 56,484 + EX28DRAFT_4393 0.26 -2.3 56,485 - EX28DRAFT_4393 0.26 +1.0 56,684 + EX28DRAFT_4393 0.41 +0.7 56,702 + EX28DRAFT_4393 0.42 +0.8 56,703 - EX28DRAFT_4393 0.42 +1.2 57,016 + EX28DRAFT_4393 0.66 +0.1 57,017 - EX28DRAFT_4393 0.66 -0.3 57,081 + EX28DRAFT_4393 0.71 +0.7 57,082 - EX28DRAFT_4393 0.71 +0.3 57,103 + EX28DRAFT_4393 0.73 +0.5 57,103 + EX28DRAFT_4393 0.73 -0.5 57,155 - EX28DRAFT_4393 0.77 -4.0 57,178 + EX28DRAFT_4393 0.79 -2.7 57,178 + EX28DRAFT_4393 0.79 +1.0 57,179 - EX28DRAFT_4393 0.79 -1.1 57,206 + EX28DRAFT_4393 0.81 +0.6 57,398 + +0.7 57,398 + +0.3 57,398 + -1.6 57,398 + -1.2 57,399 - -4.3 57,399 - +0.6 57,423 - +0.1 57,441 + -0.3 57,441 + +1.7 57,453 - +0.6 57,464 - -0.1 57,505 - +0.6 58,409 + -0.9
Or see this region's nucleotide sequence