Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4340

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4337 and EX28DRAFT_4338 overlap by 4 nucleotidesEX28DRAFT_4338 and EX28DRAFT_4339 are separated by 68 nucleotidesEX28DRAFT_4339 and EX28DRAFT_4340 are separated by 75 nucleotidesEX28DRAFT_4340 and EX28DRAFT_4341 are separated by 27 nucleotidesEX28DRAFT_4341 and EX28DRAFT_4342 are separated by 23 nucleotides EX28DRAFT_4337: EX28DRAFT_4337 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 389 to 892 _4337 EX28DRAFT_4338: EX28DRAFT_4338 - molybdenum cofactor guanylyltransferase, proteobacterial, at 889 to 1,473 _4338 EX28DRAFT_4339: EX28DRAFT_4339 - Uncharacterized protein conserved in bacteria, at 1,542 to 1,811 _4339 EX28DRAFT_4340: EX28DRAFT_4340 - Putative homoserine kinase type II (protein kinase fold), at 1,887 to 2,873 _4340 EX28DRAFT_4341: EX28DRAFT_4341 - Protein-disulfide isomerase, at 2,901 to 3,524 _4341 EX28DRAFT_4342: EX28DRAFT_4342 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,548 to 4,456 _4342 Position (kb) 1 2 3Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.887 kb on + strandat 1.029 kb on - strand, within EX28DRAFT_4338at 1.029 kb on - strand, within EX28DRAFT_4338at 1.100 kb on - strand, within EX28DRAFT_4338at 1.216 kb on + strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.350 kb on + strand, within EX28DRAFT_4338at 1.351 kb on - strand, within EX28DRAFT_4338at 1.477 kb on + strandat 1.489 kb on + strandat 1.490 kb on - strandat 1.509 kb on + strandat 1.522 kb on + strandat 1.550 kb on + strandat 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.743 kb on - strand, within EX28DRAFT_4339at 1.769 kb on + strand, within EX28DRAFT_4339at 1.798 kb on + strandat 1.799 kb on - strandat 1.809 kb on + strandat 1.809 kb on + strandat 1.867 kb on + strandat 1.867 kb on + strandat 1.918 kb on + strandat 1.919 kb on - strandat 2.055 kb on + strand, within EX28DRAFT_4340at 2.157 kb on - strand, within EX28DRAFT_4340at 2.157 kb on - strand, within EX28DRAFT_4340at 2.191 kb on - strand, within EX28DRAFT_4340at 2.191 kb on - strand, within EX28DRAFT_4340at 2.193 kb on + strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.241 kb on - strand, within EX28DRAFT_4340at 2.281 kb on + strand, within EX28DRAFT_4340at 2.281 kb on + strand, within EX28DRAFT_4340at 2.282 kb on - strand, within EX28DRAFT_4340at 2.340 kb on + strand, within EX28DRAFT_4340at 2.362 kb on + strand, within EX28DRAFT_4340at 2.640 kb on + strand, within EX28DRAFT_4340at 2.641 kb on - strand, within EX28DRAFT_4340at 2.660 kb on + strand, within EX28DRAFT_4340at 2.660 kb on + strand, within EX28DRAFT_4340at 2.712 kb on + strand, within EX28DRAFT_4340at 2.716 kb on - strand, within EX28DRAFT_4340at 2.716 kb on - strand, within EX28DRAFT_4340at 2.806 kb on + strandat 2.806 kb on + strandat 2.810 kb on + strandat 2.810 kb on + strandat 2.811 kb on - strandat 2.811 kb on - strandat 2.868 kb on + strandat 2.868 kb on + strandat 2.872 kb on - strandat 2.896 kb on + strandat 2.897 kb on - strandat 3.319 kb on - strand, within EX28DRAFT_4341at 3.319 kb on - strand, within EX28DRAFT_4341at 3.429 kb on + strand, within EX28DRAFT_4341at 3.430 kb on - strand, within EX28DRAFT_4341at 3.470 kb on + strandat 3.470 kb on + strandat 3.487 kb on - strandat 3.487 kb on - strandat 3.568 kb on - strandat 3.578 kb on - strandat 3.588 kb on - strandat 3.588 kb on - strandat 3.616 kb on + strandat 3.617 kb on - strandat 3.620 kb on - strandat 3.653 kb on - strand, within EX28DRAFT_4342at 3.664 kb on - strand, within EX28DRAFT_4342at 3.664 kb on - strand, within EX28DRAFT_4342at 3.664 kb on - strand, within EX28DRAFT_4342at 3.740 kb on - strand, within EX28DRAFT_4342at 3.742 kb on + strand, within EX28DRAFT_4342at 3.757 kb on + strand, within EX28DRAFT_4342at 3.758 kb on - strand, within EX28DRAFT_4342

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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887 + +0.2
1,029 - EX28DRAFT_4338 0.24 -1.1
1,029 - EX28DRAFT_4338 0.24 -0.1
1,100 - EX28DRAFT_4338 0.36 -0.2
1,216 + EX28DRAFT_4338 0.56 +0.5
1,293 - EX28DRAFT_4338 0.69 +0.5
1,293 - EX28DRAFT_4338 0.69 +0.1
1,350 + EX28DRAFT_4338 0.79 +0.0
1,351 - EX28DRAFT_4338 0.79 -0.0
1,477 + +0.9
1,489 + -0.6
1,490 - +0.5
1,509 + -0.9
1,522 + -0.8
1,550 + -0.5
1,695 + EX28DRAFT_4339 0.57 -2.1
1,695 + EX28DRAFT_4339 0.57 +0.5
1,695 + EX28DRAFT_4339 0.57 +0.5
1,704 - EX28DRAFT_4339 0.60 +0.3
1,704 - EX28DRAFT_4339 0.60 +0.6
1,743 - EX28DRAFT_4339 0.74 -1.5
1,769 + EX28DRAFT_4339 0.84 +0.2
1,798 + +0.1
1,799 - +1.6
1,809 + -0.2
1,809 + -0.7
1,867 + -0.0
1,867 + +2.1
1,918 + +1.3
1,919 - +0.3
2,055 + EX28DRAFT_4340 0.17 -0.5
2,157 - EX28DRAFT_4340 0.27 +0.5
2,157 - EX28DRAFT_4340 0.27 +0.7
2,191 - EX28DRAFT_4340 0.31 +0.3
2,191 - EX28DRAFT_4340 0.31 +0.8
2,193 + EX28DRAFT_4340 0.31 +0.6
2,194 - EX28DRAFT_4340 0.31 +0.7
2,194 - EX28DRAFT_4340 0.31 -0.2
2,194 - EX28DRAFT_4340 0.31 +0.5
2,194 - EX28DRAFT_4340 0.31 +0.7
2,241 - EX28DRAFT_4340 0.36 +0.2
2,281 + EX28DRAFT_4340 0.40 +2.1
2,281 + EX28DRAFT_4340 0.40 -0.7
2,282 - EX28DRAFT_4340 0.40 +0.4
2,340 + EX28DRAFT_4340 0.46 +0.8
2,362 + EX28DRAFT_4340 0.48 -0.0
2,640 + EX28DRAFT_4340 0.76 +1.3
2,641 - EX28DRAFT_4340 0.76 -0.6
2,660 + EX28DRAFT_4340 0.78 +1.2
2,660 + EX28DRAFT_4340 0.78 +0.3
2,712 + EX28DRAFT_4340 0.84 +0.1
2,716 - EX28DRAFT_4340 0.84 -0.3
2,716 - EX28DRAFT_4340 0.84 -0.5
2,806 + -2.3
2,806 + -0.8
2,810 + -0.4
2,810 + +1.6
2,811 - -2.3
2,811 - -1.2
2,868 + +0.5
2,868 + +2.7
2,872 - -4.4
2,896 + +2.5
2,897 - -0.8
3,319 - EX28DRAFT_4341 0.67 -4.4
3,319 - EX28DRAFT_4341 0.67 -2.2
3,429 + EX28DRAFT_4341 0.85 -1.3
3,430 - EX28DRAFT_4341 0.85 -2.7
3,470 + -3.1
3,470 + -1.9
3,487 - +0.4
3,487 - +0.3
3,568 - -0.5
3,578 - +0.6
3,588 - +1.9
3,588 - -0.2
3,616 + -0.2
3,617 - -0.7
3,620 - +0.0
3,653 - EX28DRAFT_4342 0.12 +1.8
3,664 - EX28DRAFT_4342 0.13 +0.1
3,664 - EX28DRAFT_4342 0.13 +0.3
3,664 - EX28DRAFT_4342 0.13 -0.4
3,740 - EX28DRAFT_4342 0.21 +0.3
3,742 + EX28DRAFT_4342 0.21 +1.1
3,757 + EX28DRAFT_4342 0.23 -0.8
3,758 - EX28DRAFT_4342 0.23 +0.1

Or see this region's nucleotide sequence