Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4265

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4264 and EX28DRAFT_4265 are separated by 172 nucleotidesEX28DRAFT_4265 and EX28DRAFT_4266 are separated by 115 nucleotidesEX28DRAFT_4266 and EX28DRAFT_4267 are separated by 69 nucleotides EX28DRAFT_4264: EX28DRAFT_4264 - F plasmid transfer operon, TraF, protein, at 68,948 to 70,258 _4264 EX28DRAFT_4265: EX28DRAFT_4265 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 70,431 to 70,919 _4265 EX28DRAFT_4266: EX28DRAFT_4266 - Fe2+/Zn2+ uptake regulation proteins, at 71,035 to 71,547 _4266 EX28DRAFT_4267: EX28DRAFT_4267 - Uncharacterized protein conserved in bacteria, at 71,617 to 71,829 _4267 Position (kb) 70 71Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 69.477 kb on + strand, within EX28DRAFT_4264at 69.492 kb on + strand, within EX28DRAFT_4264at 69.493 kb on - strand, within EX28DRAFT_4264at 69.493 kb on - strand, within EX28DRAFT_4264at 69.496 kb on + strand, within EX28DRAFT_4264at 69.496 kb on + strand, within EX28DRAFT_4264at 69.497 kb on - strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.717 kb on + strand, within EX28DRAFT_4264at 69.718 kb on - strand, within EX28DRAFT_4264at 69.967 kb on + strand, within EX28DRAFT_4264at 69.968 kb on - strand, within EX28DRAFT_4264at 69.968 kb on - strand, within EX28DRAFT_4264at 69.969 kb on + strand, within EX28DRAFT_4264at 69.969 kb on + strand, within EX28DRAFT_4264at 69.994 kb on + strand, within EX28DRAFT_4264at 69.995 kb on - strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 70.123 kb on - strand, within EX28DRAFT_4264at 70.123 kb on - strand, within EX28DRAFT_4264at 70.181 kb on - strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.323 kb on + strandat 70.336 kb on - strandat 70.339 kb on + strandat 70.340 kb on - strandat 70.340 kb on - strandat 70.371 kb on - strandat 70.371 kb on - strandat 70.414 kb on - strandat 70.513 kb on + strand, within EX28DRAFT_4265at 70.513 kb on + strand, within EX28DRAFT_4265at 70.515 kb on + strand, within EX28DRAFT_4265at 70.516 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.672 kb on + strand, within EX28DRAFT_4265at 70.673 kb on - strand, within EX28DRAFT_4265at 70.712 kb on - strand, within EX28DRAFT_4265at 70.747 kb on + strand, within EX28DRAFT_4265at 70.747 kb on + strand, within EX28DRAFT_4265at 70.787 kb on + strand, within EX28DRAFT_4265at 70.924 kb on + strandat 70.924 kb on + strandat 70.925 kb on - strandat 70.953 kb on - strandat 70.953 kb on - strandat 70.995 kb on - strandat 71.015 kb on + strandat 71.015 kb on + strandat 71.040 kb on + strandat 71.389 kb on - strand, within EX28DRAFT_4266at 71.391 kb on + strand, within EX28DRAFT_4266at 71.392 kb on - strand, within EX28DRAFT_4266at 71.587 kb on + strandat 71.587 kb on + strandat 71.588 kb on - strandat 71.598 kb on - strandat 71.627 kb on + strandat 71.654 kb on - strand, within EX28DRAFT_4267at 71.742 kb on + strand, within EX28DRAFT_4267at 71.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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69,477 + EX28DRAFT_4264 0.40 -1.0
69,492 + EX28DRAFT_4264 0.41 +0.7
69,493 - EX28DRAFT_4264 0.42 +0.6
69,493 - EX28DRAFT_4264 0.42 +0.7
69,496 + EX28DRAFT_4264 0.42 +3.8
69,496 + EX28DRAFT_4264 0.42 -1.1
69,497 - EX28DRAFT_4264 0.42 +0.8
69,498 + EX28DRAFT_4264 0.42 +0.5
69,498 + EX28DRAFT_4264 0.42 +2.2
69,498 + EX28DRAFT_4264 0.42 -0.0
69,498 + EX28DRAFT_4264 0.42 -1.6
69,499 - EX28DRAFT_4264 0.42 +0.3
69,499 - EX28DRAFT_4264 0.42 -1.4
69,499 - EX28DRAFT_4264 0.42 -1.6
69,499 - EX28DRAFT_4264 0.42 +1.0
69,499 - EX28DRAFT_4264 0.42 -2.0
69,499 - EX28DRAFT_4264 0.42 -0.5
69,717 + EX28DRAFT_4264 0.59 -2.1
69,718 - EX28DRAFT_4264 0.59 -0.7
69,967 + EX28DRAFT_4264 0.78 -1.6
69,968 - EX28DRAFT_4264 0.78 -1.3
69,968 - EX28DRAFT_4264 0.78 -0.4
69,969 + EX28DRAFT_4264 0.78 +0.4
69,969 + EX28DRAFT_4264 0.78 +0.6
69,994 + EX28DRAFT_4264 0.80 +0.8
69,995 - EX28DRAFT_4264 0.80 +1.1
69,998 + EX28DRAFT_4264 0.80 +0.4
69,998 + EX28DRAFT_4264 0.80 +0.6
69,998 + EX28DRAFT_4264 0.80 +0.1
69,998 + EX28DRAFT_4264 0.80 +0.7
69,999 - EX28DRAFT_4264 0.80 -0.1
69,999 - EX28DRAFT_4264 0.80 -3.1
69,999 - EX28DRAFT_4264 0.80 -0.8
69,999 - EX28DRAFT_4264 0.80 -2.3
70,123 - EX28DRAFT_4264 0.90 -0.1
70,123 - EX28DRAFT_4264 0.90 -2.1
70,181 - +0.4
70,272 + +0.8
70,272 + -3.4
70,273 - +0.8
70,273 - -2.1
70,273 - -1.5
70,323 + -0.1
70,336 - +4.6
70,339 + -1.0
70,340 - +0.1
70,340 - +3.0
70,371 - -0.2
70,371 - -4.3
70,414 - -0.5
70,513 + EX28DRAFT_4265 0.17 -2.7
70,513 + EX28DRAFT_4265 0.17 +0.1
70,515 + EX28DRAFT_4265 0.17 +0.3
70,516 - EX28DRAFT_4265 0.17 +0.1
70,535 - EX28DRAFT_4265 0.21 -1.4
70,535 - EX28DRAFT_4265 0.21 +0.5
70,535 - EX28DRAFT_4265 0.21 +0.5
70,672 + EX28DRAFT_4265 0.49 +0.2
70,673 - EX28DRAFT_4265 0.49 -1.8
70,712 - EX28DRAFT_4265 0.57 +3.0
70,747 + EX28DRAFT_4265 0.65 +0.1
70,747 + EX28DRAFT_4265 0.65 +1.1
70,787 + EX28DRAFT_4265 0.73 +1.0
70,924 + +0.8
70,924 + +0.1
70,925 - -1.0
70,953 - -0.6
70,953 - +0.7
70,995 - +2.5
71,015 + -0.7
71,015 + -0.6
71,040 + +3.0
71,389 - EX28DRAFT_4266 0.69 +0.3
71,391 + EX28DRAFT_4266 0.69 -0.6
71,392 - EX28DRAFT_4266 0.70 +0.5
71,587 + +0.8
71,587 + +0.4
71,588 - +1.1
71,598 - -0.4
71,627 + +0.5
71,654 - EX28DRAFT_4267 0.17 +1.2
71,742 + EX28DRAFT_4267 0.59 -1.6
71,821 - +0.1

Or see this region's nucleotide sequence