Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotides EX28DRAFT_4209 and EX28DRAFT_4210 overlap by 4 nucleotides EX28DRAFT_4210 and EX28DRAFT_4211 overlap by 1 nucleotides EX28DRAFT_4211 and EX28DRAFT_4212 overlap by 8 nucleotides EX28DRAFT_4212 and EX28DRAFT_4213 are separated by 9 nucleotides
EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310
_4208
EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000
_4209
EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133
_4210
EX28DRAFT_4211: EX28DRAFT_4211 - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN, at 18,133 to 18,681
_4211
EX28DRAFT_4212: EX28DRAFT_4212 - Acetyltransferase (GNAT) family, at 18,674 to 19,108
_4212
EX28DRAFT_4213: EX28DRAFT_4213 - phosphonate metabolism protein PhnP, at 19,118 to 19,876
_4213
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 16.055 kb on + strand, within EX28DRAFT_4208 at 16.309 kb on - strand at 16.309 kb on - strand at 16.331 kb on - strand at 16.331 kb on - strand at 16.339 kb on + strand at 16.340 kb on - strand at 16.340 kb on - strand at 16.343 kb on + strand at 16.344 kb on - strand at 16.344 kb on - strand at 16.394 kb on + strand, within EX28DRAFT_4209 at 16.395 kb on - strand, within EX28DRAFT_4209 at 16.491 kb on + strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.566 kb on - strand, within EX28DRAFT_4209 at 16.831 kb on + strand, within EX28DRAFT_4209 at 16.951 kb on + strand at 17.101 kb on + strand at 17.529 kb on - strand, within EX28DRAFT_4210 at 17.529 kb on - strand, within EX28DRAFT_4210 at 17.538 kb on - strand, within EX28DRAFT_4210 at 17.552 kb on + strand, within EX28DRAFT_4210 at 17.627 kb on - strand, within EX28DRAFT_4210 at 17.706 kb on + strand, within EX28DRAFT_4210 at 17.962 kb on + strand, within EX28DRAFT_4210 at 17.962 kb on + strand, within EX28DRAFT_4210 at 18.013 kb on + strand, within EX28DRAFT_4210 at 18.238 kb on + strand, within EX28DRAFT_4211 at 18.239 kb on - strand, within EX28DRAFT_4211 at 18.239 kb on - strand, within EX28DRAFT_4211 at 18.242 kb on + strand, within EX28DRAFT_4211 at 18.356 kb on - strand, within EX28DRAFT_4211 at 18.455 kb on - strand, within EX28DRAFT_4211 at 18.623 kb on + strand, within EX28DRAFT_4211 at 18.623 kb on + strand, within EX28DRAFT_4211 at 18.636 kb on + strand at 18.726 kb on - strand, within EX28DRAFT_4212 at 19.071 kb on - strand at 19.106 kb on + strand at 19.118 kb on - strand at 19.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 16,055 + EX28DRAFT_4208 0.66 -0.4 16,309 - +0.1 16,309 - +0.6 16,331 - -1.2 16,331 - +0.1 16,339 + -0.6 16,340 - -0.1 16,340 - -2.3 16,343 + +0.6 16,344 - +0.3 16,344 - -0.0 16,394 + EX28DRAFT_4209 0.11 +0.6 16,395 - EX28DRAFT_4209 0.11 +0.5 16,491 + EX28DRAFT_4209 0.25 +0.1 16,492 - EX28DRAFT_4209 0.25 +0.6 16,492 - EX28DRAFT_4209 0.25 -0.5 16,565 + EX28DRAFT_4209 0.36 +1.0 16,565 + EX28DRAFT_4209 0.36 +0.6 16,565 + EX28DRAFT_4209 0.36 +1.1 16,565 + EX28DRAFT_4209 0.36 +0.6 16,566 - EX28DRAFT_4209 0.36 +7.3 16,831 + EX28DRAFT_4209 0.75 -0.2 16,951 + -1.9 17,101 + +1.6 17,529 - EX28DRAFT_4210 0.47 -0.0 17,529 - EX28DRAFT_4210 0.47 +1.1 17,538 - EX28DRAFT_4210 0.48 +0.6 17,552 + EX28DRAFT_4210 0.49 -2.3 17,627 - EX28DRAFT_4210 0.55 -0.2 17,706 + EX28DRAFT_4210 0.62 -1.3 17,962 + EX28DRAFT_4210 0.85 -0.1 17,962 + EX28DRAFT_4210 0.85 -1.2 18,013 + EX28DRAFT_4210 0.89 +0.6 18,238 + EX28DRAFT_4211 0.19 +0.5 18,239 - EX28DRAFT_4211 0.19 -0.2 18,239 - EX28DRAFT_4211 0.19 +0.5 18,242 + EX28DRAFT_4211 0.20 +0.0 18,356 - EX28DRAFT_4211 0.41 -0.5 18,455 - EX28DRAFT_4211 0.59 +1.0 18,623 + EX28DRAFT_4211 0.89 +1.4 18,623 + EX28DRAFT_4211 0.89 -3.0 18,636 + +0.7 18,726 - EX28DRAFT_4212 0.12 -2.4 19,071 - -0.1 19,106 + +1.0 19,118 - +1.1 19,118 - -0.5
Or see this region's nucleotide sequence