Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4138

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4136 and EX28DRAFT_4137 are separated by 88 nucleotidesEX28DRAFT_4137 and EX28DRAFT_4138 are separated by 232 nucleotidesEX28DRAFT_4138 and EX28DRAFT_4139 overlap by 4 nucleotides EX28DRAFT_4136: EX28DRAFT_4136 - Transcriptional accessory protein, at 114,617 to 116,947 _4136 EX28DRAFT_4137: EX28DRAFT_4137 - transcription elongation factor GreB, at 117,036 to 117,509 _4137 EX28DRAFT_4138: EX28DRAFT_4138 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 117,742 to 118,461 _4138 EX28DRAFT_4139: EX28DRAFT_4139 - Signal transduction histidine kinase, at 118,458 to 119,804 _4139 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 116.785 kb on + strandat 116.886 kb on - strandat 116.908 kb on + strandat 116.920 kb on + strandat 116.984 kb on + strandat 116.985 kb on - strandat 116.985 kb on - strandat 116.985 kb on - strandat 116.989 kb on - strandat 116.989 kb on - strandat 116.989 kb on - strandat 117.042 kb on + strandat 117.043 kb on - strandat 117.064 kb on + strandat 117.065 kb on - strandat 117.065 kb on - strandat 117.160 kb on + strand, within EX28DRAFT_4137at 117.160 kb on + strand, within EX28DRAFT_4137at 117.161 kb on - strand, within EX28DRAFT_4137at 117.161 kb on - strand, within EX28DRAFT_4137at 117.362 kb on - strand, within EX28DRAFT_4137at 117.367 kb on + strand, within EX28DRAFT_4137at 117.535 kb on + strandat 117.553 kb on + strandat 117.553 kb on + strandat 117.582 kb on + strandat 117.583 kb on - strandat 117.593 kb on + strandat 117.593 kb on + strandat 117.614 kb on - strandat 117.625 kb on - strandat 117.638 kb on - strandat 117.668 kb on + strandat 117.669 kb on - strandat 117.681 kb on - strandat 117.700 kb on - strandat 117.700 kb on - strandat 117.809 kb on - strandat 117.936 kb on + strand, within EX28DRAFT_4138at 118.046 kb on - strand, within EX28DRAFT_4138at 118.321 kb on + strand, within EX28DRAFT_4138at 118.402 kb on + strandat 118.402 kb on + strandat 118.404 kb on + strandat 118.404 kb on + strandat 118.405 kb on - strandat 118.405 kb on - strandat 118.405 kb on - strandat 118.484 kb on + strandat 118.549 kb on - strandat 118.549 kb on - strandat 118.595 kb on + strand, within EX28DRAFT_4139at 118.596 kb on - strand, within EX28DRAFT_4139at 118.596 kb on - strand, within EX28DRAFT_4139at 118.598 kb on + strand, within EX28DRAFT_4139at 118.598 kb on + strand, within EX28DRAFT_4139at 118.598 kb on + strand, within EX28DRAFT_4139at 118.598 kb on + strand, within EX28DRAFT_4139at 118.599 kb on - strand, within EX28DRAFT_4139at 118.622 kb on + strand, within EX28DRAFT_4139at 118.623 kb on - strand, within EX28DRAFT_4139at 118.987 kb on + strand, within EX28DRAFT_4139at 118.988 kb on - strand, within EX28DRAFT_4139at 118.997 kb on + strand, within EX28DRAFT_4139at 118.999 kb on + strand, within EX28DRAFT_4139at 118.999 kb on + strand, within EX28DRAFT_4139at 118.999 kb on + strand, within EX28DRAFT_4139at 119.000 kb on - strand, within EX28DRAFT_4139at 119.057 kb on + strand, within EX28DRAFT_4139at 119.117 kb on + strand, within EX28DRAFT_4139at 119.123 kb on + strand, within EX28DRAFT_4139at 119.124 kb on - strand, within EX28DRAFT_4139at 119.160 kb on - strand, within EX28DRAFT_4139at 119.211 kb on - strand, within EX28DRAFT_4139at 119.251 kb on - strand, within EX28DRAFT_4139at 119.270 kb on + strand, within EX28DRAFT_4139at 119.289 kb on - strand, within EX28DRAFT_4139at 119.446 kb on + strand, within EX28DRAFT_4139

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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116,785 + -0.0
116,886 - +0.2
116,908 + +0.8
116,920 + +0.0
116,984 + -0.5
116,985 - +0.7
116,985 - +0.4
116,985 - -2.1
116,989 - +2.4
116,989 - -0.2
116,989 - -0.3
117,042 + -0.5
117,043 - +0.6
117,064 + -0.2
117,065 - +3.2
117,065 - -0.1
117,160 + EX28DRAFT_4137 0.26 +0.3
117,160 + EX28DRAFT_4137 0.26 +0.6
117,161 - EX28DRAFT_4137 0.26 -1.6
117,161 - EX28DRAFT_4137 0.26 -2.3
117,362 - EX28DRAFT_4137 0.69 -0.5
117,367 + EX28DRAFT_4137 0.70 +0.0
117,535 + +0.3
117,553 + +0.4
117,553 + +0.3
117,582 + -0.1
117,583 - -1.4
117,593 + +0.3
117,593 + +0.1
117,614 - -2.1
117,625 - -2.8
117,638 - +1.0
117,668 + +0.3
117,669 - +0.4
117,681 - -0.2
117,700 - -0.7
117,700 - +1.1
117,809 - -1.3
117,936 + EX28DRAFT_4138 0.27 +0.1
118,046 - EX28DRAFT_4138 0.42 -0.7
118,321 + EX28DRAFT_4138 0.80 +1.8
118,402 + +0.6
118,402 + -0.5
118,404 + +1.1
118,404 + +1.6
118,405 - -0.1
118,405 - +0.8
118,405 - -0.5
118,484 + +0.9
118,549 - +1.1
118,549 - +0.9
118,595 + EX28DRAFT_4139 0.10 -2.2
118,596 - EX28DRAFT_4139 0.10 +1.2
118,596 - EX28DRAFT_4139 0.10 +1.3
118,598 + EX28DRAFT_4139 0.10 -0.0
118,598 + EX28DRAFT_4139 0.10 +0.6
118,598 + EX28DRAFT_4139 0.10 +0.6
118,598 + EX28DRAFT_4139 0.10 +1.4
118,599 - EX28DRAFT_4139 0.10 +0.5
118,622 + EX28DRAFT_4139 0.12 -0.5
118,623 - EX28DRAFT_4139 0.12 +2.1
118,987 + EX28DRAFT_4139 0.39 +1.0
118,988 - EX28DRAFT_4139 0.39 -0.1
118,997 + EX28DRAFT_4139 0.40 -3.5
118,999 + EX28DRAFT_4139 0.40 +1.1
118,999 + EX28DRAFT_4139 0.40 +1.3
118,999 + EX28DRAFT_4139 0.40 +3.1
119,000 - EX28DRAFT_4139 0.40 +0.9
119,057 + EX28DRAFT_4139 0.44 +0.1
119,117 + EX28DRAFT_4139 0.49 +1.8
119,123 + EX28DRAFT_4139 0.49 +1.4
119,124 - EX28DRAFT_4139 0.49 -0.5
119,160 - EX28DRAFT_4139 0.52 -0.0
119,211 - EX28DRAFT_4139 0.56 +1.0
119,251 - EX28DRAFT_4139 0.59 -0.2
119,270 + EX28DRAFT_4139 0.60 +0.2
119,289 - EX28DRAFT_4139 0.62 -0.2
119,446 + EX28DRAFT_4139 0.73 +1.3

Or see this region's nucleotide sequence