Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotides EX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotides EX28DRAFT_4027 and EX28DRAFT_4028 are separated by 106 nucleotides
EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984
_4025
EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954
_4026
EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872
_4027
EX28DRAFT_4028: EX28DRAFT_4028 - ribokinase, at 239,979 to 240,908
_4028
Position (kb) 238
239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 237.982 kb on + strand at 237.983 kb on - strand at 237.983 kb on - strand at 237.994 kb on + strand at 238.020 kb on - strand at 238.020 kb on - strand at 238.121 kb on - strand, within EX28DRAFT_4026 at 238.121 kb on - strand, within EX28DRAFT_4026 at 238.528 kb on + strand, within EX28DRAFT_4026 at 238.529 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.580 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.586 kb on + strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.652 kb on - strand, within EX28DRAFT_4026 at 238.658 kb on + strand, within EX28DRAFT_4026 at 238.659 kb on - strand, within EX28DRAFT_4026 at 238.745 kb on + strand, within EX28DRAFT_4026 at 238.873 kb on - strand at 238.886 kb on + strand at 238.935 kb on + strand at 238.965 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.978 kb on - strand at 238.978 kb on - strand at 238.978 kb on - strand at 238.978 kb on - strand at 239.037 kb on + strand at 239.038 kb on - strand at 239.150 kb on + strand, within EX28DRAFT_4027 at 239.214 kb on + strand, within EX28DRAFT_4027 at 239.268 kb on + strand, within EX28DRAFT_4027 at 239.269 kb on - strand, within EX28DRAFT_4027 at 239.272 kb on + strand, within EX28DRAFT_4027 at 239.399 kb on + strand, within EX28DRAFT_4027 at 239.399 kb on + strand, within EX28DRAFT_4027 at 239.399 kb on + strand, within EX28DRAFT_4027 at 239.554 kb on + strand, within EX28DRAFT_4027 at 239.557 kb on + strand, within EX28DRAFT_4027 at 239.557 kb on + strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.671 kb on + strand, within EX28DRAFT_4027 at 239.870 kb on + strand at 239.871 kb on - strand at 239.871 kb on - strand at 239.914 kb on + strand at 239.931 kb on + strand at 240.085 kb on - strand, within EX28DRAFT_4028 at 240.197 kb on - strand, within EX28DRAFT_4028 at 240.221 kb on + strand, within EX28DRAFT_4028 at 240.221 kb on + strand, within EX28DRAFT_4028 at 240.458 kb on + strand, within EX28DRAFT_4028 at 240.474 kb on - strand, within EX28DRAFT_4028 at 240.494 kb on - strand, within EX28DRAFT_4028 at 240.494 kb on - strand, within EX28DRAFT_4028 at 240.620 kb on + strand, within EX28DRAFT_4028 at 240.726 kb on - strand, within EX28DRAFT_4028 at 240.744 kb on - strand, within EX28DRAFT_4028 at 240.800 kb on + strand, within EX28DRAFT_4028
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 237,982 + -0.6 237,983 - -2.0 237,983 - +0.9 237,994 + +0.6 238,020 - +1.8 238,020 - +0.3 238,121 - EX28DRAFT_4026 0.14 +1.3 238,121 - EX28DRAFT_4026 0.14 +0.6 238,528 + EX28DRAFT_4026 0.56 -0.8 238,529 - EX28DRAFT_4026 0.56 -4.2 238,551 - EX28DRAFT_4026 0.58 -1.3 238,551 - EX28DRAFT_4026 0.58 -0.1 238,551 - EX28DRAFT_4026 0.58 -0.1 238,551 - EX28DRAFT_4026 0.58 -1.5 238,580 + EX28DRAFT_4026 0.61 -1.4 238,582 + EX28DRAFT_4026 0.61 -0.1 238,582 + EX28DRAFT_4026 0.61 +0.1 238,582 + EX28DRAFT_4026 0.61 -0.0 238,582 + EX28DRAFT_4026 0.61 +0.3 238,583 - EX28DRAFT_4026 0.61 +0.4 238,583 - EX28DRAFT_4026 0.61 +1.1 238,583 - EX28DRAFT_4026 0.61 -0.1 238,583 - EX28DRAFT_4026 0.61 +0.2 238,583 - EX28DRAFT_4026 0.61 +0.1 238,586 + EX28DRAFT_4026 0.62 +2.1 238,587 - EX28DRAFT_4026 0.62 +1.3 238,587 - EX28DRAFT_4026 0.62 +0.1 238,587 - EX28DRAFT_4026 0.62 +0.7 238,640 - EX28DRAFT_4026 0.67 -1.4 238,640 - EX28DRAFT_4026 0.67 -0.6 238,640 - EX28DRAFT_4026 0.67 -1.6 238,652 - EX28DRAFT_4026 0.69 -0.4 238,658 + EX28DRAFT_4026 0.69 -1.2 238,659 - EX28DRAFT_4026 0.69 -0.5 238,745 + EX28DRAFT_4026 0.78 -2.6 238,873 - +1.2 238,886 + -0.9 238,935 + -0.6 238,965 + +0.4 238,977 + +2.1 238,977 + +0.1 238,977 + -1.4 238,977 + +1.1 238,977 + -0.5 238,977 + -3.3 238,977 + +0.5 238,978 - +0.8 238,978 - -0.0 238,978 - +0.9 238,978 - +0.4 239,037 + -0.9 239,038 - +0.6 239,150 + EX28DRAFT_4027 0.19 -0.9 239,214 + EX28DRAFT_4027 0.26 -0.9 239,268 + EX28DRAFT_4027 0.32 -0.8 239,269 - EX28DRAFT_4027 0.32 -1.2 239,272 + EX28DRAFT_4027 0.33 -0.8 239,399 + EX28DRAFT_4027 0.47 -1.2 239,399 + EX28DRAFT_4027 0.47 +0.1 239,399 + EX28DRAFT_4027 0.47 -0.2 239,554 + EX28DRAFT_4027 0.64 +0.2 239,557 + EX28DRAFT_4027 0.65 -0.4 239,557 + EX28DRAFT_4027 0.65 +0.6 239,558 - EX28DRAFT_4027 0.65 +0.3 239,558 - EX28DRAFT_4027 0.65 +0.3 239,558 - EX28DRAFT_4027 0.65 +0.7 239,558 - EX28DRAFT_4027 0.65 -1.1 239,671 + EX28DRAFT_4027 0.77 +0.3 239,870 + +0.4 239,871 - +2.0 239,871 - -2.2 239,914 + +0.3 239,931 + +0.1 240,085 - EX28DRAFT_4028 0.11 +0.1 240,197 - EX28DRAFT_4028 0.23 +5.3 240,221 + EX28DRAFT_4028 0.26 +2.0 240,221 + EX28DRAFT_4028 0.26 -0.6 240,458 + EX28DRAFT_4028 0.52 -1.9 240,474 - EX28DRAFT_4028 0.53 +0.5 240,494 - EX28DRAFT_4028 0.55 +0.9 240,494 - EX28DRAFT_4028 0.55 +0.8 240,620 + EX28DRAFT_4028 0.69 +3.0 240,726 - EX28DRAFT_4028 0.80 +4.0 240,744 - EX28DRAFT_4028 0.82 +2.2 240,800 + EX28DRAFT_4028 0.88 +2.9
Or see this region's nucleotide sequence