Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3869 and EX28DRAFT_3870 are separated by 9 nucleotides EX28DRAFT_3870 and EX28DRAFT_3871 are separated by 215 nucleotides
EX28DRAFT_3869: EX28DRAFT_3869 - L-threonine 3-dehydrogenase (EC 1.1.1.103), at 78,535 to 79,563
_3869
EX28DRAFT_3870: EX28DRAFT_3870 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29), at 79,573 to 80,769
_3870
EX28DRAFT_3871: EX28DRAFT_3871 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 80,985 to 81,917
_3871
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.627 kb on + strand at 78.628 kb on - strand at 78.630 kb on + strand at 78.630 kb on + strand at 78.678 kb on - strand, within EX28DRAFT_3869 at 78.704 kb on + strand, within EX28DRAFT_3869 at 78.704 kb on + strand, within EX28DRAFT_3869 at 78.705 kb on - strand, within EX28DRAFT_3869 at 78.705 kb on - strand, within EX28DRAFT_3869 at 79.149 kb on + strand, within EX28DRAFT_3869 at 79.150 kb on - strand, within EX28DRAFT_3869 at 79.194 kb on - strand, within EX28DRAFT_3869 at 79.236 kb on + strand, within EX28DRAFT_3869 at 79.236 kb on + strand, within EX28DRAFT_3869 at 79.237 kb on - strand, within EX28DRAFT_3869 at 79.254 kb on + strand, within EX28DRAFT_3869 at 79.255 kb on - strand, within EX28DRAFT_3869 at 79.255 kb on - strand, within EX28DRAFT_3869 at 79.294 kb on - strand, within EX28DRAFT_3869 at 79.370 kb on + strand, within EX28DRAFT_3869 at 79.430 kb on + strand, within EX28DRAFT_3869 at 79.430 kb on + strand, within EX28DRAFT_3869 at 79.430 kb on + strand, within EX28DRAFT_3869 at 79.431 kb on - strand, within EX28DRAFT_3869 at 79.582 kb on + strand at 79.719 kb on - strand, within EX28DRAFT_3870 at 79.907 kb on - strand, within EX28DRAFT_3870 at 80.162 kb on + strand, within EX28DRAFT_3870 at 80.163 kb on - strand, within EX28DRAFT_3870 at 80.331 kb on + strand, within EX28DRAFT_3870 at 80.341 kb on + strand, within EX28DRAFT_3870 at 80.615 kb on + strand, within EX28DRAFT_3870 at 80.616 kb on - strand, within EX28DRAFT_3870 at 80.688 kb on + strand at 80.691 kb on + strand at 80.691 kb on + strand at 80.692 kb on - strand at 80.803 kb on + strand at 80.804 kb on - strand at 80.804 kb on - strand at 80.816 kb on + strand at 80.816 kb on + strand at 80.816 kb on + strand at 80.818 kb on + strand at 80.819 kb on - strand at 80.864 kb on + strand at 80.915 kb on + strand at 80.915 kb on + strand at 80.915 kb on + strand at 80.915 kb on + strand at 80.916 kb on - strand at 80.916 kb on - strand at 80.919 kb on - strand at 80.919 kb on - strand at 80.924 kb on + strand at 80.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 78,627 + +0.8 78,628 - +0.4 78,630 + +0.5 78,630 + -0.5 78,678 - EX28DRAFT_3869 0.14 -1.9 78,704 + EX28DRAFT_3869 0.16 -0.3 78,704 + EX28DRAFT_3869 0.16 -0.9 78,705 - EX28DRAFT_3869 0.17 +2.1 78,705 - EX28DRAFT_3869 0.17 -2.1 79,149 + EX28DRAFT_3869 0.60 -1.2 79,150 - EX28DRAFT_3869 0.60 -0.2 79,194 - EX28DRAFT_3869 0.64 -3.3 79,236 + EX28DRAFT_3869 0.68 -0.9 79,236 + EX28DRAFT_3869 0.68 +1.2 79,237 - EX28DRAFT_3869 0.68 +1.0 79,254 + EX28DRAFT_3869 0.70 +0.7 79,255 - EX28DRAFT_3869 0.70 +0.2 79,255 - EX28DRAFT_3869 0.70 -0.8 79,294 - EX28DRAFT_3869 0.74 -0.9 79,370 + EX28DRAFT_3869 0.81 -0.7 79,430 + EX28DRAFT_3869 0.87 -2.4 79,430 + EX28DRAFT_3869 0.87 -1.3 79,430 + EX28DRAFT_3869 0.87 -0.2 79,431 - EX28DRAFT_3869 0.87 +0.3 79,582 + +0.9 79,719 - EX28DRAFT_3870 0.12 +0.7 79,907 - EX28DRAFT_3870 0.28 +0.4 80,162 + EX28DRAFT_3870 0.49 +0.3 80,163 - EX28DRAFT_3870 0.49 -1.4 80,331 + EX28DRAFT_3870 0.63 -2.1 80,341 + EX28DRAFT_3870 0.64 +1.2 80,615 + EX28DRAFT_3870 0.87 +0.5 80,616 - EX28DRAFT_3870 0.87 +0.8 80,688 + -1.0 80,691 + +2.3 80,691 + +0.2 80,692 - +1.6 80,803 + -0.7 80,804 - +0.5 80,804 - +0.6 80,816 + +1.4 80,816 + +0.3 80,816 + -0.4 80,818 + -0.8 80,819 - -2.9 80,864 + +0.6 80,915 + +0.4 80,915 + -1.4 80,915 + +1.1 80,915 + -3.0 80,916 - -1.8 80,916 - +1.4 80,919 - +0.1 80,919 - -0.3 80,924 + -0.4 80,925 - +0.6
Or see this region's nucleotide sequence