Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3782

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3780 and EX28DRAFT_3781 are separated by 34 nucleotidesEX28DRAFT_3781 and EX28DRAFT_3782 are separated by 47 nucleotidesEX28DRAFT_3782 and EX28DRAFT_3783 are separated by 113 nucleotidesEX28DRAFT_3783 and EX28DRAFT_3784 overlap by 4 nucleotides EX28DRAFT_3780: EX28DRAFT_3780 - RF-1 domain, at 462,298 to 462,720 _3780 EX28DRAFT_3781: EX28DRAFT_3781 - Uncharacterized lipoprotein NlpE involved in copper resistance, at 462,755 to 463,453 _3781 EX28DRAFT_3782: EX28DRAFT_3782 - prolyl-tRNA synthetase (EC 6.1.1.15), at 463,501 to 465,219 _3782 EX28DRAFT_3783: EX28DRAFT_3783 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 465,333 to 466,040 _3783 EX28DRAFT_3784: EX28DRAFT_3784 - hypothetical protein, at 466,037 to 466,441 _3784 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 462.814 kb on + strandat 462.840 kb on + strand, within EX28DRAFT_3781at 462.840 kb on + strand, within EX28DRAFT_3781at 463.011 kb on - strand, within EX28DRAFT_3781at 463.011 kb on - strand, within EX28DRAFT_3781at 463.145 kb on + strand, within EX28DRAFT_3781at 463.205 kb on + strand, within EX28DRAFT_3781at 463.205 kb on + strand, within EX28DRAFT_3781at 463.205 kb on + strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.212 kb on - strand, within EX28DRAFT_3781at 463.212 kb on - strand, within EX28DRAFT_3781at 463.212 kb on - strand, within EX28DRAFT_3781at 463.354 kb on + strand, within EX28DRAFT_3781at 463.354 kb on + strand, within EX28DRAFT_3781at 463.355 kb on - strand, within EX28DRAFT_3781at 463.408 kb on + strandat 463.408 kb on + strandat 463.409 kb on - strandat 463.447 kb on + strandat 463.451 kb on + strandat 463.452 kb on - strandat 465.446 kb on - strand, within EX28DRAFT_3783at 465.446 kb on - strand, within EX28DRAFT_3783at 465.493 kb on - strand, within EX28DRAFT_3783at 465.674 kb on + strand, within EX28DRAFT_3783at 465.678 kb on + strand, within EX28DRAFT_3783at 465.679 kb on - strand, within EX28DRAFT_3783at 465.712 kb on - strand, within EX28DRAFT_3783at 465.821 kb on + strand, within EX28DRAFT_3783at 465.870 kb on + strand, within EX28DRAFT_3783at 465.870 kb on + strand, within EX28DRAFT_3783at 465.871 kb on - strand, within EX28DRAFT_3783at 465.888 kb on + strand, within EX28DRAFT_3783at 465.917 kb on - strand, within EX28DRAFT_3783at 465.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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462,814 + +0.2
462,840 + EX28DRAFT_3781 0.12 -0.6
462,840 + EX28DRAFT_3781 0.12 +2.6
463,011 - EX28DRAFT_3781 0.37 +0.4
463,011 - EX28DRAFT_3781 0.37 -3.6
463,145 + EX28DRAFT_3781 0.56 -0.1
463,205 + EX28DRAFT_3781 0.64 +0.1
463,205 + EX28DRAFT_3781 0.64 +2.8
463,205 + EX28DRAFT_3781 0.64 -0.8
463,206 - EX28DRAFT_3781 0.65 +0.6
463,206 - EX28DRAFT_3781 0.65 +0.1
463,206 - EX28DRAFT_3781 0.65 +0.9
463,206 - EX28DRAFT_3781 0.65 +0.5
463,206 - EX28DRAFT_3781 0.65 +1.1
463,206 - EX28DRAFT_3781 0.65 +0.7
463,211 + EX28DRAFT_3781 0.65 +0.4
463,211 + EX28DRAFT_3781 0.65 -0.6
463,211 + EX28DRAFT_3781 0.65 -1.2
463,211 + EX28DRAFT_3781 0.65 -1.4
463,211 + EX28DRAFT_3781 0.65 -0.2
463,211 + EX28DRAFT_3781 0.65 +0.4
463,211 + EX28DRAFT_3781 0.65 -1.3
463,211 + EX28DRAFT_3781 0.65 +0.3
463,211 + EX28DRAFT_3781 0.65 +0.6
463,211 + EX28DRAFT_3781 0.65 +0.6
463,212 - EX28DRAFT_3781 0.65 +0.6
463,212 - EX28DRAFT_3781 0.65 -2.9
463,212 - EX28DRAFT_3781 0.65 -0.2
463,354 + EX28DRAFT_3781 0.86 -0.8
463,354 + EX28DRAFT_3781 0.86 -3.6
463,355 - EX28DRAFT_3781 0.86 -0.5
463,408 + +0.6
463,408 + -0.1
463,409 - -2.1
463,447 + -1.0
463,451 + +1.8
463,452 - -0.8
465,446 - EX28DRAFT_3783 0.16 -3.3
465,446 - EX28DRAFT_3783 0.16 -0.4
465,493 - EX28DRAFT_3783 0.23 -2.0
465,674 + EX28DRAFT_3783 0.48 +1.2
465,678 + EX28DRAFT_3783 0.49 -3.0
465,679 - EX28DRAFT_3783 0.49 -0.2
465,712 - EX28DRAFT_3783 0.54 +0.6
465,821 + EX28DRAFT_3783 0.69 +0.1
465,870 + EX28DRAFT_3783 0.76 +0.1
465,870 + EX28DRAFT_3783 0.76 -0.9
465,871 - EX28DRAFT_3783 0.76 +0.8
465,888 + EX28DRAFT_3783 0.78 -1.0
465,917 - EX28DRAFT_3783 0.82 -0.4
465,995 - -1.5

Or see this region's nucleotide sequence