Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3742 and EX28DRAFT_3743 are separated by 93 nucleotides EX28DRAFT_3743 and EX28DRAFT_3744 are separated by 177 nucleotides
EX28DRAFT_3742: EX28DRAFT_3742 - ABC-type Fe3+-siderophore transport system, permease component, at 420,254 to 422,236
_3742
EX28DRAFT_3743: EX28DRAFT_3743 - glutamate-1-semialdehyde-2,1-aminomutase, at 422,330 to 423,610
_3743
EX28DRAFT_3744: EX28DRAFT_3744 - Chloride channel protein EriC, at 423,788 to 425,188
_3744
Position (kb) 422
423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 421.723 kb on + strand, within EX28DRAFT_3742 at 421.802 kb on + strand, within EX28DRAFT_3742 at 422.206 kb on + strand at 422.207 kb on - strand at 422.207 kb on - strand at 422.210 kb on + strand at 422.210 kb on + strand at 422.237 kb on + strand at 422.257 kb on + strand at 422.331 kb on + strand at 422.332 kb on - strand at 423.655 kb on - strand at 423.710 kb on + strand at 423.714 kb on + strand at 424.068 kb on - strand, within EX28DRAFT_3744 at 424.312 kb on + strand, within EX28DRAFT_3744 at 424.432 kb on + strand, within EX28DRAFT_3744 at 424.457 kb on - strand, within EX28DRAFT_3744 at 424.594 kb on + strand, within EX28DRAFT_3744
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 421,723 + EX28DRAFT_3742 0.74 +1.6 421,802 + EX28DRAFT_3742 0.78 -0.1 422,206 + -0.2 422,207 - +0.6 422,207 - -0.8 422,210 + -0.2 422,210 + +0.8 422,237 + +2.0 422,257 + -0.2 422,331 + +1.9 422,332 - -0.3 423,655 - -0.1 423,710 + -0.7 423,714 + -1.2 424,068 - EX28DRAFT_3744 0.20 +0.7 424,312 + EX28DRAFT_3744 0.37 +0.6 424,432 + EX28DRAFT_3744 0.46 +0.5 424,457 - EX28DRAFT_3744 0.48 -2.0 424,594 + EX28DRAFT_3744 0.58 +1.3
Or see this region's nucleotide sequence