Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3705

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3703 and EX28DRAFT_3704 are separated by 9 nucleotidesEX28DRAFT_3704 and EX28DRAFT_3705 are separated by 18 nucleotidesEX28DRAFT_3705 and EX28DRAFT_3706 are separated by 10 nucleotides EX28DRAFT_3703: EX28DRAFT_3703 - N-acetylmuramoyl-L-alanine amidase, at 373,495 to 374,046 _3703 EX28DRAFT_3704: EX28DRAFT_3704 - Membrane protein required for beta-lactamase induction, at 374,056 to 374,910 _3704 EX28DRAFT_3705: EX28DRAFT_3705 - Predicted beta-xylosidase, at 374,929 to 375,879 _3705 EX28DRAFT_3706: EX28DRAFT_3706 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 375,890 to 377,287 _3706 Position (kb) 374 375 376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 374.045 kb on - strandat 374.052 kb on + strandat 374.052 kb on + strandat 374.052 kb on + strandat 374.068 kb on - strandat 374.214 kb on + strand, within EX28DRAFT_3704at 374.214 kb on + strand, within EX28DRAFT_3704at 374.214 kb on + strand, within EX28DRAFT_3704at 374.215 kb on - strand, within EX28DRAFT_3704at 374.239 kb on + strand, within EX28DRAFT_3704at 374.335 kb on + strand, within EX28DRAFT_3704at 374.336 kb on - strand, within EX28DRAFT_3704at 374.473 kb on - strand, within EX28DRAFT_3704at 374.485 kb on + strand, within EX28DRAFT_3704at 374.485 kb on + strand, within EX28DRAFT_3704at 374.486 kb on - strand, within EX28DRAFT_3704at 374.510 kb on + strand, within EX28DRAFT_3704at 374.684 kb on + strand, within EX28DRAFT_3704at 374.742 kb on + strand, within EX28DRAFT_3704at 374.743 kb on - strand, within EX28DRAFT_3704at 374.743 kb on - strand, within EX28DRAFT_3704at 374.753 kb on - strand, within EX28DRAFT_3704at 375.020 kb on + strandat 375.021 kb on - strandat 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.134 kb on + strand, within EX28DRAFT_3705at 375.135 kb on - strand, within EX28DRAFT_3705at 375.206 kb on - strand, within EX28DRAFT_3705at 375.227 kb on + strand, within EX28DRAFT_3705at 375.228 kb on - strand, within EX28DRAFT_3705at 375.228 kb on - strand, within EX28DRAFT_3705at 375.254 kb on + strand, within EX28DRAFT_3705at 375.254 kb on + strand, within EX28DRAFT_3705at 375.271 kb on - strand, within EX28DRAFT_3705at 375.332 kb on + strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.495 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.577 kb on - strand, within EX28DRAFT_3705at 375.577 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.638 kb on + strand, within EX28DRAFT_3705at 375.638 kb on + strand, within EX28DRAFT_3705at 375.639 kb on - strand, within EX28DRAFT_3705at 375.639 kb on - strand, within EX28DRAFT_3705at 375.735 kb on + strand, within EX28DRAFT_3705at 375.736 kb on - strand, within EX28DRAFT_3705at 375.806 kb on + strandat 375.806 kb on + strandat 375.809 kb on + strandat 375.827 kb on - strandat 375.891 kb on + strandat 375.892 kb on - strandat 375.892 kb on - strandat 375.892 kb on - strandat 375.896 kb on - strandat 376.032 kb on + strand, within EX28DRAFT_3706at 376.113 kb on + strand, within EX28DRAFT_3706at 376.237 kb on - strand, within EX28DRAFT_3706at 376.308 kb on + strand, within EX28DRAFT_3706at 376.408 kb on + strand, within EX28DRAFT_3706at 376.408 kb on + strand, within EX28DRAFT_3706at 376.409 kb on - strand, within EX28DRAFT_3706at 376.409 kb on - strand, within EX28DRAFT_3706at 376.477 kb on + strand, within EX28DRAFT_3706at 376.525 kb on - strand, within EX28DRAFT_3706at 376.525 kb on - strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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374,045 - +0.7
374,052 + -1.5
374,052 + +2.4
374,052 + +0.6
374,068 - +0.4
374,214 + EX28DRAFT_3704 0.18 -0.8
374,214 + EX28DRAFT_3704 0.18 -2.4
374,214 + EX28DRAFT_3704 0.18 +0.2
374,215 - EX28DRAFT_3704 0.19 +1.4
374,239 + EX28DRAFT_3704 0.21 -0.6
374,335 + EX28DRAFT_3704 0.33 +0.1
374,336 - EX28DRAFT_3704 0.33 +0.1
374,473 - EX28DRAFT_3704 0.49 -0.1
374,485 + EX28DRAFT_3704 0.50 +0.1
374,485 + EX28DRAFT_3704 0.50 +0.5
374,486 - EX28DRAFT_3704 0.50 +0.4
374,510 + EX28DRAFT_3704 0.53 -0.3
374,684 + EX28DRAFT_3704 0.73 +1.0
374,742 + EX28DRAFT_3704 0.80 +0.5
374,743 - EX28DRAFT_3704 0.80 +0.8
374,743 - EX28DRAFT_3704 0.80 -0.8
374,753 - EX28DRAFT_3704 0.82 +0.0
375,020 + +0.7
375,021 - -0.1
375,070 + EX28DRAFT_3705 0.15 +0.8
375,070 + EX28DRAFT_3705 0.15 +0.5
375,070 + EX28DRAFT_3705 0.15 +5.5
375,070 + EX28DRAFT_3705 0.15 -1.2
375,071 - EX28DRAFT_3705 0.15 -0.4
375,071 - EX28DRAFT_3705 0.15 +0.8
375,071 - EX28DRAFT_3705 0.15 +0.9
375,134 + EX28DRAFT_3705 0.22 -2.9
375,135 - EX28DRAFT_3705 0.22 -2.9
375,206 - EX28DRAFT_3705 0.29 +1.1
375,227 + EX28DRAFT_3705 0.31 +0.3
375,228 - EX28DRAFT_3705 0.31 +1.2
375,228 - EX28DRAFT_3705 0.31 -0.4
375,254 + EX28DRAFT_3705 0.34 +1.7
375,254 + EX28DRAFT_3705 0.34 -2.3
375,271 - EX28DRAFT_3705 0.36 +0.9
375,332 + EX28DRAFT_3705 0.42 -0.4
375,399 - EX28DRAFT_3705 0.49 +0.2
375,399 - EX28DRAFT_3705 0.49 +0.7
375,399 - EX28DRAFT_3705 0.49 +0.0
375,495 + EX28DRAFT_3705 0.60 -0.1
375,576 + EX28DRAFT_3705 0.68 -2.4
375,576 + EX28DRAFT_3705 0.68 +1.6
375,576 + EX28DRAFT_3705 0.68 +5.1
375,576 + EX28DRAFT_3705 0.68 +1.0
375,577 - EX28DRAFT_3705 0.68 +1.4
375,577 - EX28DRAFT_3705 0.68 +0.2
375,633 - EX28DRAFT_3705 0.74 +0.2
375,633 - EX28DRAFT_3705 0.74 -0.2
375,633 - EX28DRAFT_3705 0.74 +0.6
375,633 - EX28DRAFT_3705 0.74 -3.8
375,633 - EX28DRAFT_3705 0.74 +0.6
375,633 - EX28DRAFT_3705 0.74 +1.3
375,638 + EX28DRAFT_3705 0.75 -0.5
375,638 + EX28DRAFT_3705 0.75 +0.3
375,639 - EX28DRAFT_3705 0.75 -0.5
375,639 - EX28DRAFT_3705 0.75 +0.5
375,735 + EX28DRAFT_3705 0.85 +2.1
375,736 - EX28DRAFT_3705 0.85 -1.0
375,806 + +0.0
375,806 + +1.6
375,809 + +0.5
375,827 - +0.3
375,891 + -0.0
375,892 - +0.6
375,892 - -0.1
375,892 - +0.2
375,896 - -0.3
376,032 + EX28DRAFT_3706 0.10 +0.2
376,113 + EX28DRAFT_3706 0.16 +0.2
376,237 - EX28DRAFT_3706 0.25 +0.5
376,308 + EX28DRAFT_3706 0.30 +1.2
376,408 + EX28DRAFT_3706 0.37 -0.9
376,408 + EX28DRAFT_3706 0.37 +0.1
376,409 - EX28DRAFT_3706 0.37 -1.4
376,409 - EX28DRAFT_3706 0.37 +1.0
376,477 + EX28DRAFT_3706 0.42 +0.6
376,525 - EX28DRAFT_3706 0.45 -2.4
376,525 - EX28DRAFT_3706 0.45 -0.5
376,527 + EX28DRAFT_3706 0.46 -0.2
376,527 + EX28DRAFT_3706 0.46 -0.2
376,527 + EX28DRAFT_3706 0.46 +0.7
376,528 - EX28DRAFT_3706 0.46 -0.8
376,528 - EX28DRAFT_3706 0.46 +2.3
376,528 - EX28DRAFT_3706 0.46 +0.2
376,528 - EX28DRAFT_3706 0.46 +0.7

Or see this region's nucleotide sequence