Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3398 and EX28DRAFT_3399 are separated by 84 nucleotides EX28DRAFT_3399 and EX28DRAFT_3400 are separated by 98 nucleotides
EX28DRAFT_3398: EX28DRAFT_3398 - Predicted nucleoside-diphosphate-sugar epimerases, at 67,405 to 68,253
_3398
EX28DRAFT_3399: EX28DRAFT_3399 - transcriptional regulator, HxlR family, at 68,338 to 68,724
_3399
EX28DRAFT_3400: EX28DRAFT_3400 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 68,823 to 70,766
_3400
Position (kb) 68
69 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 67.346 kb on - strand at 67.420 kb on - strand at 67.440 kb on + strand at 67.441 kb on - strand at 67.528 kb on - strand, within EX28DRAFT_3398 at 67.528 kb on - strand, within EX28DRAFT_3398 at 67.598 kb on + strand, within EX28DRAFT_3398 at 67.733 kb on + strand, within EX28DRAFT_3398 at 67.835 kb on + strand, within EX28DRAFT_3398 at 67.835 kb on + strand, within EX28DRAFT_3398 at 67.835 kb on + strand, within EX28DRAFT_3398 at 68.158 kb on + strand, within EX28DRAFT_3398 at 68.159 kb on - strand, within EX28DRAFT_3398 at 68.293 kb on + strand at 68.293 kb on + strand at 68.293 kb on + strand at 68.294 kb on - strand at 68.294 kb on - strand at 68.294 kb on - strand at 68.607 kb on - strand, within EX28DRAFT_3399 at 68.611 kb on + strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.682 kb on + strand, within EX28DRAFT_3399 at 68.683 kb on - strand, within EX28DRAFT_3399 at 68.741 kb on + strand at 68.742 kb on - strand at 68.824 kb on + strand at 69.119 kb on + strand, within EX28DRAFT_3400 at 69.137 kb on - strand, within EX28DRAFT_3400 at 69.141 kb on - strand, within EX28DRAFT_3400 at 69.248 kb on - strand, within EX28DRAFT_3400 at 69.305 kb on + strand, within EX28DRAFT_3400 at 69.307 kb on + strand, within EX28DRAFT_3400 at 69.307 kb on + strand, within EX28DRAFT_3400 at 69.348 kb on - strand, within EX28DRAFT_3400 at 69.348 kb on - strand, within EX28DRAFT_3400 at 69.426 kb on + strand, within EX28DRAFT_3400 at 69.427 kb on - strand, within EX28DRAFT_3400 at 69.454 kb on + strand, within EX28DRAFT_3400 at 69.505 kb on + strand, within EX28DRAFT_3400 at 69.505 kb on + strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.611 kb on - strand, within EX28DRAFT_3400 at 69.676 kb on + strand, within EX28DRAFT_3400 at 69.676 kb on + strand, within EX28DRAFT_3400 at 69.677 kb on - strand, within EX28DRAFT_3400
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 67,346 - -1.9 67,420 - -0.2 67,440 + -0.2 67,441 - -0.0 67,528 - EX28DRAFT_3398 0.14 +0.2 67,528 - EX28DRAFT_3398 0.14 +1.4 67,598 + EX28DRAFT_3398 0.23 +1.5 67,733 + EX28DRAFT_3398 0.39 -0.6 67,835 + EX28DRAFT_3398 0.51 -2.7 67,835 + EX28DRAFT_3398 0.51 +8.7 67,835 + EX28DRAFT_3398 0.51 -0.9 68,158 + EX28DRAFT_3398 0.89 +0.3 68,159 - EX28DRAFT_3398 0.89 +1.1 68,293 + +2.1 68,293 + +0.1 68,293 + +0.9 68,294 - -2.5 68,294 - +0.6 68,294 - -2.4 68,607 - EX28DRAFT_3399 0.70 +1.5 68,611 + EX28DRAFT_3399 0.71 -0.4 68,612 - EX28DRAFT_3399 0.71 -0.5 68,612 - EX28DRAFT_3399 0.71 -3.1 68,612 - EX28DRAFT_3399 0.71 +0.5 68,612 - EX28DRAFT_3399 0.71 -0.0 68,612 - EX28DRAFT_3399 0.71 +0.1 68,682 + EX28DRAFT_3399 0.89 -0.5 68,683 - EX28DRAFT_3399 0.89 -0.7 68,741 + -0.3 68,742 - +0.8 68,824 + -0.2 69,119 + EX28DRAFT_3400 0.15 +0.2 69,137 - EX28DRAFT_3400 0.16 -0.2 69,141 - EX28DRAFT_3400 0.16 +0.1 69,248 - EX28DRAFT_3400 0.22 +0.5 69,305 + EX28DRAFT_3400 0.25 +0.2 69,307 + EX28DRAFT_3400 0.25 +1.4 69,307 + EX28DRAFT_3400 0.25 +1.8 69,348 - EX28DRAFT_3400 0.27 +0.2 69,348 - EX28DRAFT_3400 0.27 -0.0 69,426 + EX28DRAFT_3400 0.31 -1.6 69,427 - EX28DRAFT_3400 0.31 +0.1 69,454 + EX28DRAFT_3400 0.32 -0.2 69,505 + EX28DRAFT_3400 0.35 +1.7 69,505 + EX28DRAFT_3400 0.35 -0.4 69,506 - EX28DRAFT_3400 0.35 -1.3 69,506 - EX28DRAFT_3400 0.35 -0.1 69,506 - EX28DRAFT_3400 0.35 +1.3 69,506 - EX28DRAFT_3400 0.35 -0.2 69,611 - EX28DRAFT_3400 0.41 +2.6 69,676 + EX28DRAFT_3400 0.44 +1.2 69,676 + EX28DRAFT_3400 0.44 -2.6 69,677 - EX28DRAFT_3400 0.44 -3.8
Or see this region's nucleotide sequence