Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3368 and EX28DRAFT_3369 are separated by 85 nucleotides EX28DRAFT_3369 and EX28DRAFT_3370 are separated by 74 nucleotides EX28DRAFT_3370 and EX28DRAFT_3371 are separated by 56 nucleotides
EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503
_3368
EX28DRAFT_3369: EX28DRAFT_3369 - RNA chaperone Hfq, at 37,589 to 37,900
_3369
EX28DRAFT_3370: EX28DRAFT_3370 - GTP-binding protein HflX, at 37,975 to 39,255
_3370
EX28DRAFT_3371: EX28DRAFT_3371 - HflK protein, at 39,312 to 40,571
_3371
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.322 kb on - strand, within EX28DRAFT_3368 at 37.342 kb on + strand, within EX28DRAFT_3368 at 37.509 kb on + strand at 37.509 kb on + strand at 37.509 kb on + strand at 37.522 kb on + strand at 37.555 kb on + strand at 37.831 kb on + strand, within EX28DRAFT_3369 at 37.988 kb on - strand at 38.023 kb on + strand at 38.024 kb on - strand at 38.043 kb on + strand at 38.044 kb on - strand at 38.121 kb on + strand, within EX28DRAFT_3370 at 38.122 kb on - strand, within EX28DRAFT_3370 at 38.140 kb on + strand, within EX28DRAFT_3370 at 38.157 kb on + strand, within EX28DRAFT_3370 at 38.297 kb on + strand, within EX28DRAFT_3370 at 38.298 kb on - strand, within EX28DRAFT_3370 at 38.322 kb on + strand, within EX28DRAFT_3370 at 38.689 kb on - strand, within EX28DRAFT_3370 at 38.740 kb on - strand, within EX28DRAFT_3370 at 38.934 kb on + strand, within EX28DRAFT_3370 at 38.935 kb on - strand, within EX28DRAFT_3370 at 39.189 kb on + strand at 39.190 kb on - strand at 39.244 kb on + strand at 39.244 kb on + strand at 39.245 kb on - strand at 39.247 kb on - strand at 39.307 kb on + strand at 39.307 kb on + strand at 39.307 kb on + strand at 39.308 kb on - strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.310 kb on - strand at 39.333 kb on - strand at 39.903 kb on + strand, within EX28DRAFT_3371 at 39.904 kb on - strand, within EX28DRAFT_3371 at 39.988 kb on - strand, within EX28DRAFT_3371 at 39.998 kb on + strand, within EX28DRAFT_3371 at 39.998 kb on + strand, within EX28DRAFT_3371 at 40.098 kb on + strand, within EX28DRAFT_3371 at 40.120 kb on - strand, within EX28DRAFT_3371 at 40.185 kb on + strand, within EX28DRAFT_3371 at 40.188 kb on - strand, within EX28DRAFT_3371 at 40.251 kb on + strand, within EX28DRAFT_3371 at 40.252 kb on - strand, within EX28DRAFT_3371
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 37,322 - EX28DRAFT_3368 0.81 -1.2 37,342 + EX28DRAFT_3368 0.83 -2.5 37,509 + +1.4 37,509 + -1.9 37,509 + -0.2 37,522 + -0.2 37,555 + -3.6 37,831 + EX28DRAFT_3369 0.78 +0.8 37,988 - +1.0 38,023 + -1.3 38,024 - -2.5 38,043 + +1.0 38,044 - -3.7 38,121 + EX28DRAFT_3370 0.11 -0.5 38,122 - EX28DRAFT_3370 0.11 -3.6 38,140 + EX28DRAFT_3370 0.13 -1.9 38,157 + EX28DRAFT_3370 0.14 -0.0 38,297 + EX28DRAFT_3370 0.25 -0.3 38,298 - EX28DRAFT_3370 0.25 -1.0 38,322 + EX28DRAFT_3370 0.27 -0.1 38,689 - EX28DRAFT_3370 0.56 +1.3 38,740 - EX28DRAFT_3370 0.60 -1.4 38,934 + EX28DRAFT_3370 0.75 -1.8 38,935 - EX28DRAFT_3370 0.75 +2.1 39,189 + -3.6 39,190 - -0.6 39,244 + +0.1 39,244 + +0.1 39,245 - -0.4 39,247 - -2.1 39,307 + -3.1 39,307 + -0.2 39,307 + -0.4 39,308 - -0.0 39,309 + +0.0 39,309 + -2.0 39,309 + -0.2 39,309 + -2.7 39,309 + -0.2 39,309 + -0.2 39,309 + -0.2 39,309 + -0.8 39,310 - +0.6 39,333 - -2.2 39,903 + EX28DRAFT_3371 0.47 +0.1 39,904 - EX28DRAFT_3371 0.47 -2.4 39,988 - EX28DRAFT_3371 0.54 +0.0 39,998 + EX28DRAFT_3371 0.54 +0.1 39,998 + EX28DRAFT_3371 0.54 -0.6 40,098 + EX28DRAFT_3371 0.62 -0.2 40,120 - EX28DRAFT_3371 0.64 -1.7 40,185 + EX28DRAFT_3371 0.69 -1.5 40,188 - EX28DRAFT_3371 0.70 -0.5 40,251 + EX28DRAFT_3371 0.75 -0.6 40,252 - EX28DRAFT_3371 0.75 -3.1
Or see this region's nucleotide sequence