Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3251

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3250 and EX28DRAFT_3251 are separated by 13 nucleotidesEX28DRAFT_3251 and EX28DRAFT_3252 are separated by 14 nucleotidesEX28DRAFT_3252 and EX28DRAFT_3253 overlap by 4 nucleotides EX28DRAFT_3250: EX28DRAFT_3250 - K+-dependent Na+/Ca+ exchanger related-protein, at 543,706 to 544,683 _3250 EX28DRAFT_3251: EX28DRAFT_3251 - KpsF/GutQ family protein, at 544,697 to 545,683 _3251 EX28DRAFT_3252: EX28DRAFT_3252 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 545,698 to 546,264 _3252 EX28DRAFT_3253: EX28DRAFT_3253 - Uncharacterized protein conserved in bacteria, at 546,261 to 546,836 _3253 Position (kb) 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 543.714 kb on - strandat 543.714 kb on - strandat 543.714 kb on - strandat 543.732 kb on - strandat 543.754 kb on + strandat 543.755 kb on - strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.787 kb on - strandat 543.787 kb on - strandat 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.945 kb on + strand, within EX28DRAFT_3250at 543.945 kb on + strand, within EX28DRAFT_3250at 543.946 kb on - strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 544.038 kb on - strand, within EX28DRAFT_3250at 544.058 kb on + strand, within EX28DRAFT_3250at 544.063 kb on + strand, within EX28DRAFT_3250at 544.081 kb on + strand, within EX28DRAFT_3250at 544.082 kb on - strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.130 kb on - strand, within EX28DRAFT_3250at 544.130 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.137 kb on + strand, within EX28DRAFT_3250at 544.313 kb on - strand, within EX28DRAFT_3250at 544.431 kb on + strand, within EX28DRAFT_3250at 544.432 kb on - strand, within EX28DRAFT_3250at 544.434 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.452 kb on - strand, within EX28DRAFT_3250at 544.452 kb on - strand, within EX28DRAFT_3250at 544.455 kb on + strand, within EX28DRAFT_3250at 544.455 kb on + strand, within EX28DRAFT_3250at 544.544 kb on + strand, within EX28DRAFT_3250at 544.544 kb on + strand, within EX28DRAFT_3250at 544.545 kb on - strand, within EX28DRAFT_3250at 544.633 kb on - strandat 544.637 kb on + strandat 544.696 kb on + strandat 544.696 kb on + strandat 544.696 kb on + strandat 544.696 kb on + strandat 544.696 kb on + strandat 544.697 kb on - strandat 544.697 kb on - strandat 544.708 kb on - strandat 544.785 kb on + strandat 544.785 kb on + strandat 544.830 kb on + strand, within EX28DRAFT_3251at 544.831 kb on - strand, within EX28DRAFT_3251at 544.939 kb on - strand, within EX28DRAFT_3251at 545.320 kb on + strand, within EX28DRAFT_3251at 545.323 kb on + strand, within EX28DRAFT_3251at 545.323 kb on + strand, within EX28DRAFT_3251at 545.410 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.493 kb on + strand, within EX28DRAFT_3251at 545.602 kb on + strandat 545.602 kb on + strandat 545.646 kb on + strandat 545.646 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.650 kb on + strandat 545.676 kb on + strandat 545.681 kb on + strandat 545.681 kb on + strandat 545.824 kb on + strand, within EX28DRAFT_3252at 545.937 kb on + strand, within EX28DRAFT_3252at 545.937 kb on + strand, within EX28DRAFT_3252at 546.061 kb on + strand, within EX28DRAFT_3252

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
543,714 - -0.5
543,714 - -3.5
543,714 - +0.0
543,732 - -1.7
543,754 + -3.0
543,755 - -1.1
543,786 + +1.1
543,786 + +0.1
543,786 + -0.4
543,786 + -1.2
543,787 - -0.2
543,787 - -0.7
543,914 + EX28DRAFT_3250 0.21 +0.6
543,914 + EX28DRAFT_3250 0.21 -0.6
543,914 + EX28DRAFT_3250 0.21 +0.5
543,914 + EX28DRAFT_3250 0.21 +0.1
543,945 + EX28DRAFT_3250 0.24 +0.3
543,945 + EX28DRAFT_3250 0.24 -0.2
543,946 - EX28DRAFT_3250 0.25 +0.1
543,947 + EX28DRAFT_3250 0.25 +1.0
543,947 + EX28DRAFT_3250 0.25 +0.0
543,947 + EX28DRAFT_3250 0.25 -0.8
544,038 - EX28DRAFT_3250 0.34 -1.3
544,058 + EX28DRAFT_3250 0.36 +0.5
544,063 + EX28DRAFT_3250 0.37 +0.8
544,081 + EX28DRAFT_3250 0.38 +0.8
544,082 - EX28DRAFT_3250 0.38 -0.6
544,129 + EX28DRAFT_3250 0.43 -0.0
544,129 + EX28DRAFT_3250 0.43 -1.0
544,129 + EX28DRAFT_3250 0.43 -1.3
544,130 - EX28DRAFT_3250 0.43 +0.2
544,130 - EX28DRAFT_3250 0.43 +0.1
544,132 - EX28DRAFT_3250 0.44 +0.1
544,132 - EX28DRAFT_3250 0.44 -1.0
544,132 - EX28DRAFT_3250 0.44 +0.5
544,137 + EX28DRAFT_3250 0.44 +0.3
544,313 - EX28DRAFT_3250 0.62 -0.6
544,431 + EX28DRAFT_3250 0.74 -1.0
544,432 - EX28DRAFT_3250 0.74 -1.6
544,434 + EX28DRAFT_3250 0.74 +0.8
544,451 + EX28DRAFT_3250 0.76 -0.6
544,451 + EX28DRAFT_3250 0.76 +0.5
544,451 + EX28DRAFT_3250 0.76 +0.4
544,451 + EX28DRAFT_3250 0.76 +0.1
544,452 - EX28DRAFT_3250 0.76 +2.0
544,452 - EX28DRAFT_3250 0.76 -0.9
544,455 + EX28DRAFT_3250 0.77 +1.5
544,455 + EX28DRAFT_3250 0.77 -1.8
544,544 + EX28DRAFT_3250 0.86 +3.0
544,544 + EX28DRAFT_3250 0.86 +0.9
544,545 - EX28DRAFT_3250 0.86 -1.1
544,633 - +0.1
544,637 + -0.2
544,696 + -1.6
544,696 + -0.0
544,696 + +1.7
544,696 + +0.2
544,696 + +2.7
544,697 - -0.7
544,697 - +1.1
544,708 - -1.1
544,785 + +1.2
544,785 + -2.2
544,830 + EX28DRAFT_3251 0.13 +0.5
544,831 - EX28DRAFT_3251 0.14 -1.0
544,939 - EX28DRAFT_3251 0.25 -1.7
545,320 + EX28DRAFT_3251 0.63 -0.8
545,323 + EX28DRAFT_3251 0.63 +2.2
545,323 + EX28DRAFT_3251 0.63 -0.3
545,410 + EX28DRAFT_3251 0.72 +0.1
545,493 + EX28DRAFT_3251 0.81 -1.2
545,493 + EX28DRAFT_3251 0.81 +0.6
545,493 + EX28DRAFT_3251 0.81 +0.8
545,493 + EX28DRAFT_3251 0.81 -1.1
545,493 + EX28DRAFT_3251 0.81 -0.5
545,493 + EX28DRAFT_3251 0.81 -0.0
545,493 + EX28DRAFT_3251 0.81 -0.9
545,493 + EX28DRAFT_3251 0.81 +0.2
545,602 + +0.1
545,602 + +0.8
545,646 + +1.8
545,646 + +0.3
545,650 + +1.3
545,650 + -0.7
545,650 + -0.2
545,650 + -0.5
545,650 + +1.4
545,650 + -1.8
545,650 + +1.5
545,650 + +0.3
545,650 + +1.5
545,650 + -3.0
545,650 + -1.3
545,650 + +0.2
545,650 + +1.2
545,676 + +0.5
545,681 + +1.2
545,681 + +0.5
545,824 + EX28DRAFT_3252 0.22 -0.6
545,937 + EX28DRAFT_3252 0.42 -0.6
545,937 + EX28DRAFT_3252 0.42 -2.7
546,061 + EX28DRAFT_3252 0.64 -1.3

Or see this region's nucleotide sequence